Analysis of interatomic Contacts of Structural Units in PDB entry:
1CMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CMX entry

There are 4 chains in PDB entry 1CMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6ASN 234
B
 MET 301GLY 375
C
 ALA 407ASN 634
D
 LYS 706GLY 775
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1CMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
44 46Right-handed 310
Helix 3
3
A
90 100Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
111 122Right-handed alpha
Helix 6
6
A
132 143Right-handed alpha
Helix 7
7
A
146 150Right-handed alpha
Helix 8
8
A
201 203Right-handed 310
Helix 9
9
A
205 221Right-handed alpha
Helix 10
10
B
323 334Right-handed alpha
Helix 11
11
B
338 340Right-handed 310
Helix 12
12
C
415 425Right-handed alpha
Helix 13
13
C
443 445Right-handed 310
Helix 14
14
C
490 500Right-handed alpha
Helix 15
15
C
503 505Right-handed 310
Helix 16
16
C
511 521Right-handed alpha
Helix 17
17
C
532 544Right-handed alpha
Helix 18
18
C
546 550Right-handed 310
Helix 19
19
C
601 603Right-handed 310
Helix 20
20
C
605 620Right-handed alpha
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There are 3 sheets in PDB entry 1CMX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
227 233anti-parallel
Strand 3
A
54 60anti-parallel
Strand 4
A
165 172anti-parallel
Strand 5
A
176 180anti-parallel
Strand 6
A
189 193anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 316first strand
Strand 2
B
302 306anti-parallel
Strand 3
B
366 371parallel
Strand 4
B
341 344anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
431 436first strand
Strand 2
C
627 633anti-parallel
Strand 3
C
454 459anti-parallel
Strand 4
C
566 573anti-parallel
Strand 5
C
576 580anti-parallel
Strand 6
C
589 593anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il