Analysis of interatomic Contacts of Structural Units in PDB entry:
1CPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CPB entry

There are 2 chains in PDB entry 1CPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4GLU 85
B
 GLU 93LEU 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1CPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
14 26Right-handed alpha
Helix 2
B
A
72 80Right-handed alpha
Helix 3
C
B
94 101Right-handed alpha
Helix 4
D
B
112 119Right-handed alpha
Helix 5
E
B
173 187Right-handed alpha
Helix 6
F
B
216 233Right-handed alpha
Helix 7
G
B
254 266Right-handed alpha
Helix 8
H
B
285 306Right-handed alpha
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There is 1 sheet ( S1) in PDB entry 1CPB.

There are 8 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
48 53anti-parallel
Strand 3
B
104 108anti-parallel
Strand 4
A
60 67parallel
Strand 5
B
190 196parallel
Strand 6
B
265 271parallel
Strand 7
B
200 204anti-parallel
Strand 8
B
239 241parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il