Analysis of interatomic Contacts of Structural Units in PDB entry:
1CSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CSJ entry

There are 2 chains in PDB entry 1CSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 531
B
 SER 1LYS 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 1CSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 35Right-handed 310
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
44 53Right-handed alpha
Helix 4
4
A
61 76Right-handed alpha
Helix 5
5
A
84 91Right-handed alpha
Helix 6
6
A
104 110Right-handed alpha
Helix 7
7
A
112 129Right-handed alpha
Helix 8
8
A
164 188Right-handed alpha
Helix 9
9
A
192 195Right-handed 310
Helix 10
10
A
196 210Right-handed alpha
Helix 11
11
A
223 228Right-handed alpha
Helix 12
12
A
229 242Right-handed alpha
Helix 13
13
A
246 260Right-handed alpha
Helix 14
14
A
285 306Right-handed alpha
Helix 15
15
A
328 346Right-handed alpha
Helix 16
16
A
359 363Right-handed 310
Helix 17
17
A
388 398Right-handed alpha
Helix 18
18
A
406 415Right-handed alpha
Helix 19
19
A
418 424Right-handed alpha
Helix 20
20
A
424 436Right-handed alpha
Helix 21
21
A
455 457Right-handed 310
Helix 22
22
A
458 468Right-handed alpha
Helix 23
23
A
469 473Right-handed 310
Helix 24
24
A
478 493Right-handed alpha
Helix 25
25
A
496 514Right-handed alpha
Helix 26
26
A
516 525Right-handed alpha
Helix 27
27
B
24 29Right-handed alpha
Helix 28
28
B
33 35Right-handed 310
Helix 29
29
B
41 43Right-handed 310
Helix 30
30
B
44 53Right-handed alpha
Helix 31
31
B
61 76Right-handed alpha
Helix 32
32
B
84 91Right-handed alpha
Helix 33
33
B
104 110Right-handed alpha
Helix 34
34
B
112 129Right-handed alpha
Helix 35
35
B
164 188Right-handed alpha
Helix 36
36
B
192 195Right-handed 310
Helix 37
37
B
196 210Right-handed alpha
Helix 38
38
B
223 228Right-handed alpha
Helix 39
39
B
229 243Right-handed alpha
Helix 40
40
B
246 260Right-handed alpha
Helix 41
41
B
285 306Right-handed alpha
Helix 42
42
B
328 346Right-handed alpha
Helix 43
43
B
359 363Right-handed 310
Helix 44
44
B
388 398Right-handed alpha
Helix 45
45
B
406 415Right-handed alpha
Helix 46
46
B
418 424Right-handed alpha
Helix 47
47
B
424 436Right-handed alpha
Helix 48
48
B
455 457Right-handed 310
Helix 49
49
B
458 468Right-handed alpha
Helix 50
50
B
469 473Right-handed 310
Helix 51
51
B
478 493Right-handed alpha
Helix 52
52
B
496 514Right-handed alpha
Helix 53
53
B
516 525Right-handed alpha
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There are 10 sheets in PDB entry 1CSJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
136 140parallel
Strand 5
A
159 162anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
144 146anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
309 315anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
380 385anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
451 454anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
273 277anti-parallel
Strand 3
B
264 267anti-parallel
Strand 4
B
136 140parallel
Strand 5
B
159 162anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
144 146anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
309 315anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
380 385anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 446first strand
Strand 2
B
451 454anti-parallel
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