Analysis of interatomic Contacts of Structural Units in PDB entry:
1CVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1CVJ entry

There are 16 chains in PDB entry 1CVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	A 1	A 9
N	A 1	A 7
O	A 1	A 7
P	A 1	A 7
Q	A 1	A 8
R	A 1	A 7
S	A 1	A 7
T	A 1	A 7
A	ALA 11	ARG 179
B	ALA 11	SER 175
C	ALA 11	GLU 178
D	ALA 11	SER 175
E	ALA 11	GLU 178
F	ALA 11	PHE 173
G	ALA 11	SER 175
H	ALA 11	SER 175

There are 46 helices in PDB entry 1CVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	32	Right-handed alpha
Helix 2	2	A	33	35	Right-handed 310
Helix 3	3	A	61	70	Right-handed alpha
Helix 4	4	A	91	96	Right-handed alpha
Helix 5	5	A	111	121	Right-handed alpha
Helix 6	6	A	147	155	Right-handed alpha
Helix 7	7	B	23	32	Right-handed alpha
Helix 8	8	B	33	35	Right-handed 310
Helix 9	9	B	61	73	Right-handed alpha
Helix 10	10	B	91	96	Right-handed alpha
Helix 11	11	B	111	121	Right-handed alpha
Helix 12	12	B	147	155	Right-handed alpha
Helix 13	13	C	23	32	Right-handed alpha
Helix 14	14	C	33	35	Right-handed 310
Helix 15	15	C	61	73	Right-handed alpha
Helix 16	16	C	91	96	Right-handed alpha
Helix 17	17	C	111	121	Right-handed alpha
Helix 18	18	C	147	158	Right-handed alpha
Helix 19	19	D	23	32	Right-handed alpha
Helix 20	20	D	33	35	Right-handed 310
Helix 21	21	D	61	73	Right-handed alpha
Helix 22	22	D	91	96	Right-handed alpha
Helix 23	23	D	111	120	Right-handed alpha
Helix 24	24	D	147	158	Right-handed alpha
Helix 25	25	E	23	32	Right-handed alpha
Helix 26	26	E	33	35	Right-handed 310
Helix 27	27	E	61	70	Right-handed alpha
Helix 28	28	E	91	96	Right-handed alpha
Helix 29	29	E	111	120	Right-handed alpha
Helix 30	30	E	147	158	Right-handed alpha
Helix 31	31	F	23	32	Right-handed alpha
Helix 32	32	F	33	35	Right-handed 310
Helix 33	33	F	61	70	Right-handed alpha
Helix 34	34	F	91	96	Right-handed alpha
Helix 35	35	G	23	32	Right-handed alpha
Helix 36	36	G	33	35	Right-handed 310
Helix 37	37	G	61	73	Right-handed alpha
Helix 38	38	G	91	96	Right-handed alpha
Helix 39	39	G	111	120	Right-handed alpha
Helix 40	40	G	121	123	Right-handed 310
Helix 41	41	G	147	158	Right-handed alpha
Helix 42	42	H	23	32	Right-handed alpha
Helix 43	43	H	33	35	Right-handed 310
Helix 44	44	H	61	70	Right-handed alpha
Helix 45	45	H	91	97	Right-handed alpha
Helix 46	46	H	113	120	Right-handed alpha

There are 24 sheets in PDB entry 1CVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	44	first strand
Strand 2	A	51	59	anti-parallel
Strand 3	A	12	16	anti-parallel
Strand 4	A	83	86	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	80	81	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	130	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	100	104	anti-parallel
Strand 4	A	166	172	anti-parallel
Strand 5	A	160	163	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	44	first strand
Strand 2	B	51	59	anti-parallel
Strand 3	B	12	16	anti-parallel
Strand 4	B	83	86	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	80	81	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	100	103	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	44	first strand
Strand 2	C	51	59	anti-parallel
Strand 3	C	12	16	anti-parallel
Strand 4	C	83	86	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	80	81	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	100	104	anti-parallel
Strand 4	C	166	172	anti-parallel
Strand 5	C	161	163	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	44	first strand
Strand 2	D	51	59	anti-parallel
Strand 3	D	12	16	anti-parallel
Strand 4	D	83	86	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	80	81	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	129	first strand
Strand 2	D	141	145	anti-parallel
Strand 3	D	100	104	anti-parallel
Strand 4	D	169	172	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	44	first strand
Strand 2	E	51	59	anti-parallel
Strand 3	E	12	16	anti-parallel
Strand 4	E	83	86	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	E	80	81	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	145	anti-parallel
Strand 3	E	100	104	anti-parallel
Strand 4	E	169	172	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	44	first strand
Strand 2	F	51	59	anti-parallel
Strand 3	F	12	16	anti-parallel
Strand 4	F	83	86	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	77	first strand
Strand 2	F	80	81	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	143	145	anti-parallel
Strand 3	F	125	127	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	44	first strand
Strand 2	G	51	59	anti-parallel
Strand 3	G	12	16	anti-parallel
Strand 4	G	83	86	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	77	first strand
Strand 2	G	80	81	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	129	first strand
Strand 2	G	141	145	anti-parallel
Strand 3	G	100	104	anti-parallel
Strand 4	G	169	172	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	44	first strand
Strand 2	H	51	59	anti-parallel
Strand 3	H	12	16	anti-parallel
Strand 4	H	83	86	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	77	first strand
Strand 2	H	80	81	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	141	145	anti-parallel
Strand 3	H	125	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1CVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1CVJ