Analysis of interatomic Contacts of Structural Units in PDB entry:
1CVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CVL entry

There is 1 chain in PDB entry 1CVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1CVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 39Right-handed alpha
Helix 2
2
A
61 76Right-handed alpha
Helix 3
3
A
89 99Right-handed 310
Helix 4
4
A
118 127Right-handed alpha
Helix 5
5
A
137 149Right-handed alpha
Helix 6
6
A
156 162Right-handed alpha
Helix 7
7
A
169 178Right-handed alpha
Helix 8
8
A
237 240Right-handed 310
Helix 9
9
A
243 256Right-handed alpha
Helix 10
10
A
268 271Right-handed alpha
Helix 11
11
A
303 316Right-handed alpha
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There are 4 sheets in PDB entry 1CVL. Click on sheet of interest to get list of strands forming it: A1, A2, B, C,

There are 6 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
11 14parallel
Strand 3
A
81 86parallel
Strand 4
A
104 110parallel
Strand 5
A
202 211parallel
Strand 6
A
196 199anti-parallel
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There are 6 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
10 14parallel
Strand 3
A
81 86parallel
Strand 4
A
104 110parallel
Strand 5
A
202 211parallel
Strand 6
A
275 281parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
27 28anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
226 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il