Analysis of interatomic Contacts of Structural Units in PDB entry:
1CVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CVR entry

There is 1 chain in PDB entry 1CVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1GLU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1CVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed 310
Helix 2
2
A
24 34Right-handed alpha
Helix 3
3
A
43 47Right-handed alpha
Helix 4
4
A
51 65Right-handed alpha
Helix 5
5
A
93 98Right-handed 310
Helix 6
6
A
117 134Right-handed alpha
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
162 178Right-handed alpha
Helix 9
9
A
191 202Right-handed alpha
Helix 10
10
A
226 230Right-handed 310
Helix 11
11
A
255 263Right-handed alpha
Helix 12
12
A
285 299Right-handed alpha
Helix 13
13
A
309 326Right-handed alpha
Helix 14
14
A
325 335Right-handed alpha
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There are 6 sheets in PDB entry 1CVR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
11 16parallel
Strand 3
A
70 76parallel
Strand 4
A
109 113parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
90 92anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
144 149parallel
Strand 3
A
205 209parallel
Strand 4
A
238 242parallel
Strand 5
A
274 278parallel
Strand 6
A
336 339anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
268 269anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
368 373anti-parallel
Strand 3
A
398 402anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
425 432parallel
Strand 3
A
412 418anti-parallel
Strand 4
A
379 384anti-parallel
Strand 5
A
387 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il