Analysis of interatomic Contacts of Structural Units in PDB entry:
1D00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1D00 entry

There are 16 chains in PDB entry 1D00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 334	LEU 501
B	ALA 334	LEU 501
C	ALA 334	LEU 501
D	ALA 334	LEU 501
E	ALA 334	LEU 501
F	ALA 334	LEU 501
G	ALA 334	LEU 501
H	ALA 334	LEU 501
I	PRO 250	THR 254
J	PRO 250	THR 254
K	PRO 250	THR 254
L	PRO 250	THR 254
M	PRO 250	THR 254
N	PRO 250	THR 254
O	PRO 250	THR 254
P	PRO 250	THR 254

There are 28 helices in PDB entry 1D00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	2	A	360	370	Right-handed alpha
Helix 2	4	A	418	422	Right-handed 310
Helix 3	5	A	453	457	Right-handed 310
Helix 4	6	B	334	348	Right-handed alpha
Helix 5	7	B	360	370	Right-handed alpha
Helix 6	9	B	418	422	Right-handed 310
Helix 7	10	B	453	457	Right-handed 310
Helix 8	12	C	360	370	Right-handed alpha
Helix 9	14	C	418	422	Right-handed 310
Helix 10	15	C	453	457	Right-handed 310
Helix 11	17	D	360	370	Right-handed alpha
Helix 12	19	D	418	422	Right-handed 310
Helix 13	20	D	453	457	Right-handed 310
Helix 14	21	E	334	347	Right-handed alpha
Helix 15	22	E	360	370	Right-handed alpha
Helix 16	24	E	418	422	Right-handed 310
Helix 17	25	E	453	457	Right-handed 310
Helix 18	26	F	338	348	Right-handed alpha
Helix 19	27	F	360	370	Right-handed alpha
Helix 20	29	F	418	422	Right-handed 310
Helix 21	30	F	453	457	Right-handed 310
Helix 22	31	G	336	348	Right-handed alpha
Helix 23	32	G	360	370	Right-handed alpha
Helix 24	34	G	418	422	Right-handed 310
Helix 25	35	G	453	457	Right-handed 310
Helix 26	36	H	336	348	Right-handed alpha
Helix 27	37	H	360	370	Right-handed alpha
Helix 28	39	H	418	422	Right-handed 310

There are 24 sheets in PDB entry 1D00. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	359	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	430	434	anti-parallel
Strand 4	A	443	447	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	251	252	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	406	414	anti-parallel
Strand 4	A	389	395	anti-parallel
Strand 5	A	376	377	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	251	252	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	406	414	anti-parallel
Strand 4	A	389	395	anti-parallel
Strand 5	A	381	382	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	359	first strand
Strand 2	B	489	496	anti-parallel
Strand 3	B	430	434	anti-parallel
Strand 4	B	443	447	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	251	252	first strand
Strand 2	B	467	474	anti-parallel
Strand 3	B	406	414	anti-parallel
Strand 4	B	389	395	anti-parallel
Strand 5	B	376	377	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	251	252	first strand
Strand 2	B	467	474	anti-parallel
Strand 3	B	406	414	anti-parallel
Strand 4	B	389	395	anti-parallel
Strand 5	B	381	382	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	359	first strand
Strand 2	C	489	496	anti-parallel
Strand 3	C	430	434	anti-parallel
Strand 4	C	443	447	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	251	252	first strand
Strand 2	C	467	474	anti-parallel
Strand 3	C	406	414	anti-parallel
Strand 4	C	389	395	anti-parallel
Strand 5	C	376	377	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	251	252	first strand
Strand 2	C	467	474	anti-parallel
Strand 3	C	406	414	anti-parallel
Strand 4	C	389	395	anti-parallel
Strand 5	C	381	382	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	359	first strand
Strand 2	D	489	496	anti-parallel
Strand 3	D	430	434	anti-parallel
Strand 4	D	443	447	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	252	first strand
Strand 2	D	467	474	anti-parallel
Strand 3	D	406	414	anti-parallel
Strand 4	D	389	395	anti-parallel
Strand 5	D	376	377	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	251	252	first strand
Strand 2	D	467	474	anti-parallel
Strand 3	D	406	414	anti-parallel
Strand 4	D	389	395	anti-parallel
Strand 5	D	381	382	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	358	first strand
Strand 2	E	490	496	anti-parallel
Strand 3	E	430	434	anti-parallel
Strand 4	E	443	447	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	251	252	first strand
Strand 2	E	467	474	anti-parallel
Strand 3	E	406	414	anti-parallel
Strand 4	E	389	395	anti-parallel
Strand 5	E	376	377	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	251	252	first strand
Strand 2	E	467	474	anti-parallel
Strand 3	E	406	414	anti-parallel
Strand 4	E	389	395	anti-parallel
Strand 5	E	381	382	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	359	first strand
Strand 2	F	489	496	anti-parallel
Strand 3	F	430	434	anti-parallel
Strand 4	F	443	447	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	251	252	first strand
Strand 2	F	467	474	anti-parallel
Strand 3	F	406	414	anti-parallel
Strand 4	F	389	395	anti-parallel
Strand 5	F	376	377	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	251	252	first strand
Strand 2	F	467	474	anti-parallel
Strand 3	F	406	414	anti-parallel
Strand 4	F	389	395	anti-parallel
Strand 5	F	381	382	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	353	359	first strand
Strand 2	G	489	496	anti-parallel
Strand 3	G	430	434	anti-parallel
Strand 4	G	443	447	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	251	252	first strand
Strand 2	G	467	474	anti-parallel
Strand 3	G	406	414	anti-parallel
Strand 4	G	389	395	anti-parallel
Strand 5	G	376	377	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	251	252	first strand
Strand 2	G	467	474	anti-parallel
Strand 3	G	406	414	anti-parallel
Strand 4	G	389	395	anti-parallel
Strand 5	G	381	382	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	353	358	first strand
Strand 2	H	490	496	anti-parallel
Strand 3	H	430	434	anti-parallel
Strand 4	H	443	447	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	251	252	first strand
Strand 2	H	467	474	anti-parallel
Strand 3	H	406	413	anti-parallel
Strand 4	H	389	395	anti-parallel
Strand 5	H	376	377	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	251	252	first strand
Strand 2	H	467	474	anti-parallel
Strand 3	H	406	413	anti-parallel
Strand 4	H	389	395	anti-parallel
Strand 5	H	381	382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1D00

Analysis of interatomic Contacts of Structural Units in PDB entry:
1D00