Analysis of interatomic Contacts of Structural Units in PDB entry:
1D07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D07 entry

There is 1 chain in PDB entry 1D07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ALA 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1D07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 53Right-handed 310
Helix 2
2
A
82 96Right-handed alpha
Helix 3
3
A
109 120Right-handed alpha
Helix 4
4
A
145 155Right-handed alpha
Helix 5
5
A
159 164Right-handed alpha
Helix 6
6
A
168 177Right-handed alpha
Helix 7
7
A
184 192Right-handed alpha
Helix 8
8
A
202 211Right-handed alpha
Helix 9
9
A
218 234Right-handed alpha
Helix 10
10
A
250 258Right-handed alpha
Helix 11
11
A
274 277Right-handed 310
Helix 12
12
A
278 293Right-handed alpha
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There is 1 sheet ( S1) in PDB entry 1D07.

There are 8 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
30 36parallel
Strand 5
A
102 107parallel
Strand 6
A
125 131parallel
Strand 7
A
238 245parallel
Strand 8
A
263 270parallel
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