Analysis of interatomic Contacts of Structural Units in PDB entry:
1D0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1D0J entry

There are 11 chains in PDB entry 1D0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 334	LEU 501
B	ALA 334	LEU 501
C	ALA 334	LEU 501
D	ALA 334	LEU 501
E	ALA 334	LEU 501
F	ALA 334	LEU 501
G	ALA 232	GLU 236
H	ALA 232	GLU 236
I	GLY 231	GLU 236
J	GLY 231	GLU 236
K	ALA 232	GLU 236

There are 30 helices in PDB entry 1D0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	334	348	Right-handed alpha
Helix 2	2	A	360	370	Right-handed alpha
Helix 3	3	A	399	403	Right-handed 310
Helix 4	4	A	418	422	Right-handed 310
Helix 5	5	A	476	478	Right-handed 310
Helix 6	6	B	334	348	Right-handed alpha
Helix 7	7	B	360	370	Right-handed alpha
Helix 8	8	B	399	403	Right-handed 310
Helix 9	9	B	418	422	Right-handed 310
Helix 10	10	C	334	348	Right-handed alpha
Helix 11	11	C	360	370	Right-handed alpha
Helix 12	12	C	399	403	Right-handed 310
Helix 13	13	C	418	422	Right-handed 310
Helix 14	14	C	476	478	Right-handed 310
Helix 15	15	D	334	348	Right-handed alpha
Helix 16	16	D	360	370	Right-handed alpha
Helix 17	17	D	399	403	Right-handed 310
Helix 18	18	D	418	422	Right-handed 310
Helix 19	19	D	453	457	Right-handed 310
Helix 20	20	D	476	478	Right-handed 310
Helix 21	21	E	334	348	Right-handed alpha
Helix 22	22	E	360	370	Right-handed alpha
Helix 23	23	E	399	403	Right-handed 310
Helix 24	24	E	418	422	Right-handed 310
Helix 25	25	E	476	478	Right-handed 310
Helix 26	26	F	334	348	Right-handed alpha
Helix 27	27	F	360	370	Right-handed alpha
Helix 28	28	F	399	403	Right-handed 310
Helix 29	29	F	418	422	Right-handed 310
Helix 30	30	F	476	478	Right-handed 310

There are 18 sheets in PDB entry 1D0J. Click on sheet of interest to get list of strands forming it: A, B, B1, C, D, D1, E, F, F1, G, H, H1, I, J, J1, K, L, L1,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	359	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	430	434	anti-parallel
Strand 4	A	443	447	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	233	234	first strand
Strand 2	A	467	474	first strand
Strand 3	A	406	414	anti-parallel
Strand 4	A	389	395	anti-parallel
Strand 5	A	375	377	anti-parallel

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There are 5 strands in B1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	233	234	first strand
Strand 2	A	467	474	first strand
Strand 3	A	406	414	anti-parallel
Strand 4	A	389	395	anti-parallel
Strand 5	A	381	382	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	358	first strand
Strand 2	B	490	496	anti-parallel
Strand 3	B	430	434	anti-parallel
Strand 4	B	443	447	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	474	first strand
Strand 2	B	406	414	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	375	377	anti-parallel

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There are 4 strands in D1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	474	first strand
Strand 2	B	406	414	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	381	382	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	359	first strand
Strand 2	C	489	496	anti-parallel
Strand 3	C	430	435	anti-parallel
Strand 4	C	443	447	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	233	234	first strand
Strand 2	C	467	474	first strand
Strand 3	C	406	413	anti-parallel
Strand 4	C	389	395	anti-parallel
Strand 5	C	376	377	anti-parallel

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There are 5 strands in F1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	233	234	first strand
Strand 2	C	467	474	first strand
Strand 3	C	406	413	anti-parallel
Strand 4	C	389	395	anti-parallel
Strand 5	C	381	382	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	359	first strand
Strand 2	D	489	496	anti-parallel
Strand 3	D	430	434	anti-parallel
Strand 4	D	443	447	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	233	234	first strand
Strand 2	D	467	474	first strand
Strand 3	D	406	414	anti-parallel
Strand 4	D	389	395	anti-parallel
Strand 5	D	376	377	anti-parallel

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There are 5 strands in H1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	233	234	first strand
Strand 2	D	467	474	first strand
Strand 3	D	406	414	anti-parallel
Strand 4	D	389	395	anti-parallel
Strand 5	D	381	382	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	359	first strand
Strand 2	E	489	496	anti-parallel
Strand 3	E	430	434	anti-parallel
Strand 4	E	443	447	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	233	234	first strand
Strand 2	E	467	474	first strand
Strand 3	E	406	414	anti-parallel
Strand 4	E	389	395	anti-parallel
Strand 5	E	375	377	anti-parallel

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There are 5 strands in J1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	233	234	first strand
Strand 2	E	467	474	first strand
Strand 3	E	406	414	anti-parallel
Strand 4	E	389	395	anti-parallel
Strand 5	E	381	382	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	359	first strand
Strand 2	F	489	496	anti-parallel
Strand 3	F	430	434	anti-parallel
Strand 4	F	443	447	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	233	234	first strand
Strand 2	F	467	474	first strand
Strand 3	F	406	413	anti-parallel
Strand 4	F	389	395	anti-parallel
Strand 5	F	376	377	anti-parallel

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There are 5 strands in L1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	233	234	first strand
Strand 2	F	467	474	first strand
Strand 3	F	406	413	anti-parallel
Strand 4	F	389	395	anti-parallel
Strand 5	F	381	382	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1D0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1D0J