Analysis of interatomic Contacts of Structural Units in PDB entry:
1D2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D2M entry

There is 1 chain in PDB entry 1D2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1D2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
20 27Right-handed alpha
Helix 3
3
A
41 54Right-handed alpha
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
88 92Right-handed 310
Helix 6
6
A
100 103Right-handed 310
Helix 7
7
A
114 128Right-handed alpha
Helix 8
8
A
140 142Right-handed 310
Helix 9
9
A
147 154Right-handed alpha
Helix 10
10
A
250 272Right-handed alpha
Helix 11
11
A
274 296Right-handed alpha
Helix 12
12
A
300 303Right-handed 310
Helix 13
13
A
304 310Right-handed alpha
Helix 14
14
A
319 324Right-handed 310
Helix 15
15
A
334 359Right-handed alpha
Helix 16
16
A
363 369Right-handed 310
Helix 17
17
A
373 380Right-handed alpha
Helix 18
18
A
392 399Right-handed alpha
Helix 19
19
A
424 439Right-handed alpha
Helix 20
20
A
449 462Right-handed alpha
Helix 21
21
A
477 488Right-handed alpha
Helix 22
22
A
521 524Right-handed 310
Helix 23
23
A
525 534Right-handed alpha
Helix 24
24
A
535 537Right-handed 310
Helix 25
25
A
552 577Right-handed alpha
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There are 6 sheets in PDB entry 1D2M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
133 138parallel
Strand 3
A
57 61parallel
Strand 4
A
329 333parallel
Strand 5
A
383 388parallel
Strand 6
A
31 36parallel
Strand 7
A
401 405parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
104 106anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
237 239anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
189 190parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
208 210anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
543 547parallel
Strand 3
A
509 514parallel
Strand 4
A
442 446parallel
Strand 5
A
493 496parallel
Strand 6
A
467 470parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il