Analysis of interatomic Contacts of Structural Units in PDB entry:
1D2N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D2N entry

There is 1 chain in PDB entry 1D2N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 505ASP 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 1D2N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
520 538Right-handed alpha
Helix 2
2
A
557 568Right-handed alpha
Helix 3
3
A
578 580Right-handed 310
Helix 4
4
A
586 602Right-handed alpha
Helix 5
5
A
613 616Right-handed alpha
Helix 6
6
A
628 637Right-handed alpha
Helix 7
7
A
657 662Right-handed alpha
Helix 8
8
A
681 691Right-handed alpha
Helix 9
9
A
696 706Right-handed alpha
Helix 10
10
A
715 727Right-handed alpha
Helix 11
11
A
730 743Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1D2N.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 674first strand
Strand 2
A
544 550parallel
Strand 3
A
647 654parallel
Strand 4
A
605 610parallel
Strand 5
A
572 576parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il