Analysis of interatomic Contacts of Structural Units in PDB entry:
1D2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D2P entry

There is 1 chain in PDB entry 1D2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 535THR 907
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1D2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
578 580Right-handed 310
Helix 2
2
A
669 671Right-handed 310
Helix 3
3
A
763 767Right-handed 310
Helix 4
4
A
824 828Right-handed 310
Helix 5
5
A
896 899Right-handed 310
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There are 11 sheets in PDB entry 1D2P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 589first strand
Strand 2
A
536 546anti-parallel
Strand 3
A
617 622parallel
Strand 4
A
609 614anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 576first strand
Strand 2
A
558 565anti-parallel
Strand 3
A
599 603anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 592first strand
Strand 2
A
595 596anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 680first strand
Strand 2
A
626 636anti-parallel
Strand 3
A
713 718parallel
Strand 4
A
702 706anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 667first strand
Strand 2
A
648 655anti-parallel
Strand 3
A
690 694anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 776first strand
Strand 2
A
723 733anti-parallel
Strand 3
A
804 809parallel
Strand 4
A
796 801anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 762first strand
Strand 2
A
746 752anti-parallel
Strand 3
A
786 790anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 779first strand
Strand 2
A
782 783anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
860 867first strand
Strand 2
A
813 823anti-parallel
Strand 3
A
900 906parallel
Strand 4
A
888 893anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 854first strand
Strand 2
A
835 842anti-parallel
Strand 3
A
877 881anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 870first strand
Strand 2
A
873 874anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il