Analysis of interatomic Contacts of Structural Units in PDB entry:
1D4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D4P entry

There are 4 chains in PDB entry 1D4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ILE 33
B
 ILE 37PHE 293
H
 GLY 300GLU 308
H
 LEU 310GLN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1D4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
B
77 80Right-handed 310
Helix 4
4
B
84 87Right-handed 310
Helix 5
5
B
91 93Right-handed 310
Helix 6
6
B
158 166Right-handed alpha
Helix 7
7
B
205 211Right-handed alpha
Helix 8
8
B
282 293Right-handed alpha
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There are 3 sheets in PDB entry 1D4P. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
197 202anti-parallel
Strand 3
B
171 176anti-parallel
Strand 4
B
244 248anti-parallel
Strand 5
B
255 263anti-parallel
Strand 6
B
274 278anti-parallel
Strand 7
B
221 224anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
95 99anti-parallel
Strand 5
B
113 122anti-parallel
Strand 6
B
137 141anti-parallel
Strand 7
B
73 76anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
88 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il