Analysis of interatomic Contacts of Structural Units in PDB entry:
1D5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D5F entry

There are 3 chains in PDB entry 1D5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 497ALA 846
B
 ASN 497ALA 846
C
 ASN 497ALA 846
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1D5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
508 520Right-handed alpha
Helix 2
2
A
524 530Right-handed 310
Helix 3
3
A
545 560Right-handed alpha
Helix 4
4
A
561 565Right-handed 310
Helix 5
5
A
587 602Right-handed alpha
Helix 6
6
A
612 619Right-handed alpha
Helix 7
7
A
624 626Right-handed 310
Helix 8
8
A
627 632Right-handed alpha
Helix 9
9
A
632 645Right-handed alpha
Helix 10
10
A
686 700Right-handed alpha
Helix 11
11
A
703 717Right-handed alpha
Helix 12
12
A
728 738Right-handed alpha
Helix 13
13
A
761 773Right-handed alpha
Helix 14
14
A
775 787Right-handed alpha
Helix 15
15
A
796 801Right-handed 310
Helix 16
16
A
819 821Right-handed 310
Helix 17
17
A
831 846Right-handed alpha
Helix 18
18
B
508 523Right-handed alpha
Helix 19
19
B
524 530Right-handed 310
Helix 20
20
B
545 560Right-handed alpha
Helix 21
21
B
585 600Right-handed alpha
Helix 22
22
B
611 619Right-handed alpha
Helix 23
23
B
624 632Right-handed alpha
Helix 24
24
B
632 645Right-handed alpha
Helix 25
25
B
676 680Right-handed 310
Helix 26
26
B
686 700Right-handed alpha
Helix 27
27
B
703 718Right-handed alpha
Helix 28
28
B
729 738Right-handed alpha
Helix 29
29
B
761 774Right-handed alpha
Helix 30
30
B
777 787Right-handed alpha
Helix 31
31
B
796 801Right-handed 310
Helix 32
32
B
819 821Right-handed 310
Helix 33
33
B
831 844Right-handed alpha
Helix 34
34
C
508 524Right-handed alpha
Helix 35
35
C
525 530Right-handed 310
Helix 36
36
C
545 561Right-handed alpha
Helix 37
37
C
562 565Right-handed 310
Helix 38
38
C
585 602Right-handed alpha
Helix 39
39
C
611 619Right-handed alpha
Helix 40
40
C
627 632Right-handed alpha
Helix 41
41
C
632 644Right-handed alpha
Helix 42
42
C
685 700Right-handed alpha
Helix 43
43
C
705 719Right-handed alpha
Helix 44
44
C
721 726Right-handed 310
Helix 45
45
C
728 738Right-handed alpha
Helix 46
46
C
761 774Right-handed alpha
Helix 47
47
C
775 787Right-handed alpha
Helix 48
48
C
796 801Right-handed 310
Helix 49
49
C
831 845Right-handed alpha
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There are 12 sheets in PDB entry 1D5F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 504first strand
Strand 2
A
534 536parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
576 578anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 662first strand
Strand 2
A
668 672anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 754first strand
Strand 2
A
803 809parallel
Strand 3
A
823 828parallel
Strand 4
A
816 818anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 504first strand
Strand 2
B
534 536parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 570first strand
Strand 2
B
575 578anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
658 659first strand
Strand 2
B
671 672anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
752 754first strand
Strand 2
B
803 809parallel
Strand 3
B
823 828parallel
Strand 4
B
816 818anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
502 504first strand
Strand 2
C
534 536parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
567 569first strand
Strand 2
C
576 578anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
658 659first strand
Strand 2
C
671 672anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
752 754first strand
Strand 2
C
803 806parallel
Strand 3
C
823 826parallel
Strand 4
C
816 818anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il