Analysis of interatomic Contacts of Structural Units in PDB entry:
1D5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D5R entry

There is 1 chain in PDB entry 1D5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14VAL 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1D5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 61Right-handed alpha
Helix 2
2
A
97 99Right-handed 310
Helix 3
3
A
100 113Right-handed alpha
Helix 4
4
A
128 142Right-handed alpha
Helix 5
5
A
147 160Right-handed alpha
Helix 6
6
A
168 185Right-handed alpha
Helix 7
7
A
278 280Right-handed 310
Helix 8
8
A
323 325Right-handed 310
Helix 9
9
A
327 331Right-handed 310
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There are 3 sheets in PDB entry 1D5R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
32 35anti-parallel
Strand 3
A
119 123parallel
Strand 4
A
65 71parallel
Strand 5
A
85 90parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
238 250anti-parallel
Strand 3
A
192 200anti-parallel
Strand 4
A
342 349anti-parallel
Strand 5
A
316 321anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
213 219anti-parallel
Strand 3
A
252 259anti-parallel
Strand 4
A
268 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il