Analysis of interatomic Contacts of Structural Units in PDB entry:
1D5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D5Y entry

There are 8 chains in PDB entry 1D5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 T 1 G 21
N
 A 1 C 21
O
 T 1 G 21
P
 A 1 C 21
A
 GLN 3ALA 294
D
 GLN 3ALA 294
C
 GLN 3ALA 294
B
 GLN 3ALA 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1D5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed alpha
Helix 2
2
A
24 29Right-handed alpha
Helix 3
3
A
34 47Right-handed alpha
Helix 4
4
A
49 69Right-handed alpha
Helix 5
5
A
72 80Right-handed alpha
Helix 6
6
A
84 97Right-handed alpha
Helix 7
7
A
99 106Right-handed alpha
Helix 8
8
A
148 150Right-handed 310
Helix 9
9
A
151 171Right-handed alpha
Helix 10
10
A
204 208Right-handed alpha
Helix 11
11
A
209 211Right-handed 310
Helix 12
12
A
235 246Right-handed alpha
Helix 13
13
A
246 251Right-handed alpha
Helix 14
14
A
266 269Right-handed 310
Helix 15
15
D
3 15Right-handed alpha
Helix 16
16
D
34 47Right-handed alpha
Helix 17
17
D
49 69Right-handed alpha
Helix 18
18
D
72 80Right-handed alpha
Helix 19
19
D
84 97Right-handed alpha
Helix 20
20
D
99 106Right-handed alpha
Helix 21
21
D
148 150Right-handed 310
Helix 22
22
D
151 169Right-handed alpha
Helix 23
23
D
204 208Right-handed alpha
Helix 24
24
D
209 211Right-handed 310
Helix 25
25
D
235 246Right-handed alpha
Helix 26
26
D
246 251Right-handed alpha
Helix 27
27
D
266 269Right-handed 310
Helix 28
28
C
3 18Right-handed alpha
Helix 29
29
C
26 30Right-handed 310
Helix 30
30
C
34 47Right-handed alpha
Helix 31
31
C
49 69Right-handed alpha
Helix 32
32
C
72 80Right-handed alpha
Helix 33
33
C
84 97Right-handed alpha
Helix 34
34
C
99 106Right-handed alpha
Helix 35
35
C
151 168Right-handed alpha
Helix 36
36
C
235 246Right-handed alpha
Helix 37
37
C
246 252Right-handed alpha
Helix 38
38
B
3 16Right-handed alpha
Helix 39
39
B
34 45Right-handed alpha
Helix 40
40
B
49 69Right-handed alpha
Helix 41
41
B
72 80Right-handed alpha
Helix 42
42
B
84 97Right-handed alpha
Helix 43
43
B
99 106Right-handed alpha
Helix 44
44
B
148 150Right-handed 310
Helix 45
45
B
151 169Right-handed alpha
Helix 46
46
B
235 246Right-handed alpha
Helix 47
47
B
246 251Right-handed alpha
Helix 48
48
B
266 269Right-handed 310
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There are 7 sheets in PDB entry 1D5Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
222 232anti-parallel
Strand 3
A
278 288anti-parallel
Strand 4
A
254 255anti-parallel
Strand 5
A
109 110anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
222 232anti-parallel
Strand 3
A
278 288anti-parallel
Strand 4
A
260 264anti-parallel
Strand 5
A
178 186anti-parallel
Strand 6
A
194 203anti-parallel
Strand 7
A
136 144anti-parallel
Strand 8
A
215 219anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 133first strand
Strand 2
D
222 232anti-parallel
Strand 3
D
278 286anti-parallel
Strand 4
D
260 264anti-parallel
Strand 5
D
178 186anti-parallel
Strand 6
D
194 203anti-parallel
Strand 7
D
136 144anti-parallel
Strand 8
D
215 219anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 110first strand
Strand 2
C
254 255anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 133first strand
Strand 2
C
222 232anti-parallel
Strand 3
C
278 286anti-parallel
Strand 4
C
260 264anti-parallel
Strand 5
C
178 186anti-parallel
Strand 6
C
194 203anti-parallel
Strand 7
C
136 144anti-parallel
Strand 8
C
215 219anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Strand 2
B
254 255anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 133first strand
Strand 2
B
222 232anti-parallel
Strand 3
B
278 286anti-parallel
Strand 4
B
260 264anti-parallel
Strand 5
B
178 186anti-parallel
Strand 6
B
194 203anti-parallel
Strand 7
B
136 145anti-parallel
Strand 8
B
215 219anti-parallel
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