Analysis of interatomic Contacts of Structural Units in PDB entry:
1D6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D6A entry

There are 2 chains in PDB entry 1D6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1THR 262
B
 VAL 1THR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 1D6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 28Right-handed alpha
Helix 2
2
A
57 59Right-handed 310
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
108 110Right-handed 310
Helix 5
5
A
122 130Right-handed alpha
Helix 6
6
A
134 138Right-handed 310
Helix 7
7
A
141 153Right-handed alpha
Helix 8
8
A
159 175Right-handed alpha
Helix 9
9
A
174 180Right-handed alpha
Helix 10
10
A
180 190Right-handed alpha
Helix 11
11
A
198 207Right-handed alpha
Helix 12
12
A
207 218Right-handed alpha
Helix 13
13
A
242 246Right-handed alpha
Helix 14
14
B
12 28Right-handed alpha
Helix 15
15
B
57 59Right-handed 310
Helix 16
16
B
95 106Right-handed alpha
Helix 17
17
B
108 110Right-handed 310
Helix 18
18
B
122 130Right-handed alpha
Helix 19
19
B
134 138Right-handed 310
Helix 20
20
B
141 153Right-handed alpha
Helix 21
21
B
159 174Right-handed alpha
Helix 22
22
B
174 180Right-handed alpha
Helix 23
23
B
180 190Right-handed alpha
Helix 24
24
B
198 208Right-handed alpha
Helix 25
25
B
207 218Right-handed alpha
Helix 26
26
B
242 246Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1D6A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
49 55parallel
Strand 3
A
61 67anti-parallel
Strand 4
A
73 80anti-parallel
Strand 5
A
84 89anti-parallel
Strand 6
A
112 114parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
37 38anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 230first strand
Strand 2
A
236 241anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
49 55parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
73 80anti-parallel
Strand 5
B
84 89anti-parallel
Strand 6
B
112 114parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
37 38anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 230first strand
Strand 2
B
236 241anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il