Analysis of interatomic Contacts of Structural Units in PDB entry:
1D6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D6J entry

There are 2 chains in PDB entry 1D6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8LYS 210
B
 HIS 8LYS 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1D6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
33 36Right-handed 310
Helix 3
3
A
37 51Right-handed alpha
Helix 4
4
A
61 68Right-handed alpha
Helix 5
5
A
76 97Right-handed alpha
Helix 6
6
A
109 122Right-handed alpha
Helix 7
7
A
188 203Right-handed alpha
Helix 8
8
B
13 22Right-handed alpha
Helix 9
9
B
37 51Right-handed alpha
Helix 10
10
B
62 67Right-handed alpha
Helix 11
11
B
76 97Right-handed alpha
Helix 12
12
B
109 122Right-handed alpha
Helix 13
13
B
141 146Right-handed alpha
Helix 14
14
B
188 203Right-handed alpha
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There are 2 sheets in PDB entry 1D6J. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
100 103parallel
Strand 3
A
26 31parallel
Strand 4
A
133 139parallel
Strand 5
A
180 183parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
100 103parallel
Strand 3
B
26 31parallel
Strand 4
B
133 139parallel
Strand 5
B
180 183parallel
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