Analysis of interatomic Contacts of Structural Units in PDB entry:
1D6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D6N entry

There are 2 chains in PDB entry 1D6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 217
B
 SER 4ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1D6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
24 29Right-handed alpha
Helix 3
3
A
37 57Right-handed alpha
Helix 4
4
A
71 86Right-handed alpha
Helix 5
5
A
119 125Right-handed 310
Helix 6
6
A
139 152Right-handed alpha
Helix 7
7
A
208 215Right-handed alpha
Helix 8
8
B
17 21Right-handed 310
Helix 9
9
B
24 29Right-handed alpha
Helix 10
10
B
37 57Right-handed alpha
Helix 11
11
B
71 86Right-handed alpha
Helix 12
12
B
119 125Right-handed 310
Helix 13
13
B
139 152Right-handed alpha
Helix 14
14
B
208 215Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1D6N. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
177 182parallel
Strand 3
A
156 165parallel
Strand 4
A
128 136parallel
Strand 5
A
61 66parallel
Strand 6
A
94 99parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
177 182parallel
Strand 3
B
156 165parallel
Strand 4
B
128 136parallel
Strand 5
B
61 66parallel
Strand 6
B
94 99parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
204 207anti-parallel
Strand 3
B
187 188anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il