Analysis of interatomic Contacts of Structural Units in PDB entry:
1D6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D6R entry

There are 2 chains in PDB entry 1D6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16ASN 245
I
 LYS 6LYS 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1D6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
164 172Right-handed alpha
Helix 3
3
A
231 233Right-handed 310
Helix 4
4
A
234 245Right-handed alpha
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There are 4 sheets in PDB entry 1D6R. Click on sheet of interest to get list of strands forming it: A, A1, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
226 229anti-parallel
Strand 3
A
204 216anti-parallel
Strand 4
A
198 201anti-parallel
Strand 5
A
135 140anti-parallel
Strand 6
A
156 161anti-parallel
Strand 7
A
20 21anti-parallel
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There are 5 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
226 229anti-parallel
Strand 3
A
204 216anti-parallel
Strand 4
I
12 15anti-parallel
Strand 5
I
22 24anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
30 34anti-parallel
Strand 4
A
64 67anti-parallel
Strand 5
A
81 90anti-parallel
Strand 6
A
104 108anti-parallel
Strand 7
A
51 54anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
27 29first strand
Strand 2
I
48 51anti-parallel
Strand 3
I
39 41anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il