Analysis of interatomic Contacts of Structural Units in PDB entry:
1D6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D6Y entry

There are 4 chains in PDB entry 1D6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7ASN 465
A
 ASP 467LYS 724
B
 HIS 6ASN 465
B
 ASP 467LYS 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1D6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
73 80Right-handed alpha
Helix 3
3
A
100 114Right-handed alpha
Helix 4
4
A
132 143Right-handed alpha
Helix 5
5
A
188 201Right-handed alpha
Helix 6
6
A
202 212Right-handed alpha
Helix 7
7
A
216 218Right-handed 310
Helix 8
8
A
255 258Right-handed 310
Helix 9
9
A
382 388Right-handed alpha
Helix 10
10
A
504 509Right-handed alpha
Helix 11
11
A
572 577Right-handed alpha
Helix 12
12
A
625 631Right-handed alpha
Helix 13
13
A
632 636Right-handed 310
Helix 14
14
A
663 668Right-handed alpha
Helix 15
15
A
692 696Right-handed 310
Helix 16
16
B
10 18Right-handed alpha
Helix 17
17
B
73 80Right-handed alpha
Helix 18
18
B
100 112Right-handed alpha
Helix 19
19
B
132 143Right-handed alpha
Helix 20
20
B
188 201Right-handed alpha
Helix 21
21
B
202 211Right-handed alpha
Helix 22
22
B
216 218Right-handed 310
Helix 23
23
B
255 258Right-handed 310
Helix 24
24
B
382 388Right-handed alpha
Helix 25
25
B
504 509Right-handed alpha
Helix 26
26
B
572 577Right-handed alpha
Helix 27
27
B
625 631Right-handed alpha
Helix 28
28
B
632 636Right-handed 310
Helix 29
29
B
663 668Right-handed alpha
Helix 30
30
B
692 696Right-handed 310
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There are 14 sheets in PDB entry 1D6Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
68 70anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
37 41anti-parallel
Strand 4
A
47 50anti-parallel
Strand 5
A
53 56anti-parallel
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There are 23 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
316 319parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
328 335anti-parallel
Strand 5
A
339 349anti-parallel
Strand 6
A
352 368anti-parallel
Strand 7
A
380 381anti-parallel
Strand 8
A
352 368anti-parallel
Strand 9
A
524 534anti-parallel
Strand 10
A
677 689anti-parallel
Strand 11
A
638 642anti-parallel
Strand 12
A
677 689anti-parallel
Strand 13
A
540 552anti-parallel
Strand 14
A
561 570anti-parallel
Strand 15
A
540 552anti-parallel
Strand 16
A
585 594anti-parallel
Strand 17
A
600 606anti-parallel
Strand 18
A
699 711anti-parallel
Strand 19
A
480 488anti-parallel
Strand 20
A
468 475parallel
Strand 21
A
448 461anti-parallel
Strand 22
A
420 440anti-parallel
Strand 23
A
407 414anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
151 158anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
173 180anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
242 249anti-parallel
Strand 3
A
260 269anti-parallel
Strand 4
A
274 280anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
B
722 723anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
B
307 309anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 494first strand
Strand 2
A
519 522anti-parallel
Strand 3
A
512 516anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
67 71anti-parallel
Strand 3
B
62 64anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
37 41anti-parallel
Strand 4
B
47 50anti-parallel
Strand 5
B
53 56anti-parallel
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There are 23 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
316 319parallel
Strand 3
B
322 325anti-parallel
Strand 4
B
328 335anti-parallel
Strand 5
B
339 349anti-parallel
Strand 6
B
352 368anti-parallel
Strand 7
B
380 381anti-parallel
Strand 8
B
352 368anti-parallel
Strand 9
B
524 534anti-parallel
Strand 10
B
677 689anti-parallel
Strand 11
B
638 642anti-parallel
Strand 12
B
677 689anti-parallel
Strand 13
B
540 552anti-parallel
Strand 14
B
561 570anti-parallel
Strand 15
B
540 552anti-parallel
Strand 16
B
585 594anti-parallel
Strand 17
B
600 606anti-parallel
Strand 18
B
699 711anti-parallel
Strand 19
B
480 488anti-parallel
Strand 20
B
468 475parallel
Strand 21
B
448 461anti-parallel
Strand 22
B
420 440anti-parallel
Strand 23
B
407 414anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 129first strand
Strand 2
B
151 158anti-parallel
Strand 3
B
161 168anti-parallel
Strand 4
B
173 180anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
242 249anti-parallel
Strand 3
B
260 269anti-parallel
Strand 4
B
274 280anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 494first strand
Strand 2
B
519 522anti-parallel
Strand 3
B
512 516anti-parallel
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