Analysis of interatomic Contacts of Structural Units in PDB entry:
1D7O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D7O entry

There is 1 chain in PDB entry 1D7O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11PHE 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1D7O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 43Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
A
69 72Right-handed 310
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
99 104Right-handed alpha
Helix 6
6
A
105 111Right-handed alpha
Helix 7
7
A
115 128Right-handed alpha
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
151 163Right-handed alpha
Helix 10
10
A
163 174Right-handed alpha
Helix 11
11
A
188 192Right-handed 310
Helix 12
12
A
201 225Right-handed alpha
Helix 13
13
A
245 258Right-handed alpha
Helix 14
14
A
265 277Right-handed alpha
Helix 15
15
A
278 282Right-handed 310
Helix 16
16
A
294 298Right-handed 310
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There is 1 sheet ( A) in PDB entry 1D7O.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
46 52parallel
Strand 3
A
20 24parallel
Strand 4
A
130 135parallel
Strand 5
A
177 187parallel
Strand 6
A
227 233parallel
Strand 7
A
288 291parallel
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