Analysis of interatomic Contacts of Structural Units in PDB entry:
1D7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D7R entry

There is 1 chain in PDB entry 1D7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1D7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 17Right-handed alpha
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
61 73Right-handed alpha
Helix 4
4
A
84 98Right-handed alpha
Helix 5
5
A
110 127Right-handed alpha
Helix 6
6
A
142 148Right-handed alpha
Helix 7
7
A
184 200Right-handed alpha
Helix 8
8
A
224 236Right-handed alpha
Helix 9
9
A
256 262Right-handed alpha
Helix 10
10
A
271 276Right-handed alpha
Helix 11
11
A
286 296Right-handed alpha
Helix 12
12
A
307 324Right-handed alpha
Helix 13
13
A
325 348Right-handed alpha
Helix 14
14
A
377 390Right-handed alpha
Helix 15
15
A
414 433Right-handed alpha
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There are 5 sheets in PDB entry 1D7R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
391 392parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
281 285anti-parallel
Strand 3
A
267 270anti-parallel
Strand 4
A
239 243parallel
Strand 5
A
204 209parallel
Strand 6
A
130 134parallel
Strand 7
A
164 167parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
182 183anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
219 220anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
395 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il