Analysis of interatomic Contacts of Structural Units in PDB entry:
1D8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D8C entry

There is 1 chain in PDB entry 1D8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1D8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 24Right-handed alpha
Helix 2
2
A
24 29Right-handed alpha
Helix 3
3
A
31 71Right-handed alpha
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
123 132Right-handed alpha
Helix 7
7
A
138 144Right-handed alpha
Helix 8
8
A
159 178Right-handed alpha
Helix 9
9
A
184 186Right-handed 310
Helix 10
10
A
212 214Right-handed 310
Helix 11
11
A
248 252Right-handed 310
Helix 12
12
A
279 295Right-handed alpha
Helix 13
13
A
359 378Right-handed alpha
Helix 14
14
A
395 414Right-handed alpha
Helix 15
15
A
428 434Right-handed alpha
Helix 16
16
A
434 441Right-handed alpha
Helix 17
17
A
452 464Right-handed alpha
Helix 18
18
A
465 468Right-handed 310
Helix 19
19
A
472 478Right-handed 310
Helix 20
20
A
479 496Right-handed alpha
Helix 21
21
A
514 522Right-handed alpha
Helix 22
22
A
522 528Right-handed alpha
Helix 23
23
A
537 551Right-handed alpha
Helix 24
24
A
552 563Right-handed alpha
Helix 25
25
A
564 567Right-handed 310
Helix 26
26
A
568 577Right-handed alpha
Helix 27
27
A
588 614Right-handed alpha
Helix 28
28
A
631 648Right-handed alpha
Helix 29
29
A
652 671Right-handed alpha
Helix 30
30
A
687 699Right-handed alpha
Helix 31
31
A
700 707Right-handed 310
Helix 32
32
A
708 720Right-handed alpha
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There are 5 sheets in PDB entry 1D8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
345 350anti-parallel
Strand 4
A
356 358anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
266 270parallel
Strand 3
A
334 338parallel
Strand 4
A
386 390parallel
Strand 5
A
420 426parallel
Strand 6
A
446 451parallel
Strand 7
A
503 508parallel
Strand 8
A
532 535parallel
Strand 9
A
116 120parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
256 262anti-parallel
Strand 3
A
236 242anti-parallel
Strand 4
A
228 233anti-parallel
Strand 5
A
216 220anti-parallel
Strand 6
A
317 321anti-parallel
Strand 7
A
326 329anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
207 208anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
627 628anti-parallel
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