Analysis of interatomic Contacts of Structural Units in PDB entry:
1D8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D8T entry

There are 10 chains in PDB entry 1D8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLY 393
B
 LYS 9GLY 393
C
 SER 1SER 1
C
 VAL 5VAL 5
C
 GLY 7GLY 7
C
 SER 13PRO 14
D
 SER 1SER 1
D
 VAL 5VAL 5
D
 GLY 7GLY 7
D
 SER 13PRO 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1D8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 40Right-handed alpha
Helix 2
2
A
45 51Right-handed alpha
Helix 3
3
A
83 94Right-handed alpha
Helix 4
4
A
112 126Right-handed alpha
Helix 5
5
A
136 140Right-handed 310
Helix 6
6
A
142 160Right-handed alpha
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
173 179Right-handed alpha
Helix 9
9
A
181 199Right-handed alpha
Helix 10
10
A
204 208Right-handed 310
Helix 11
11
A
282 286Right-handed 310
Helix 12
12
B
23 40Right-handed alpha
Helix 13
13
B
45 51Right-handed alpha
Helix 14
14
B
83 94Right-handed alpha
Helix 15
15
B
112 126Right-handed alpha
Helix 16
16
B
136 140Right-handed 310
Helix 17
17
B
142 159Right-handed alpha
Helix 18
18
B
163 167Right-handed 310
Helix 19
19
B
173 179Right-handed alpha
Helix 20
20
B
181 199Right-handed alpha
Helix 21
21
B
204 208Right-handed 310
Helix 22
22
B
282 286Right-handed 310
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There are 16 sheets in PDB entry 1D8T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
11 17parallel
Strand 4
A
101 106parallel
Strand 5
A
130 135parallel
Strand 6
A
169 171parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
60 63anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
291 293anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
251 260anti-parallel
Strand 5
A
263 265anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
291 293anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
251 260anti-parallel
Strand 5
A
273 278anti-parallel
Strand 6
A
224 230anti-parallel
Strand 7
A
216 220anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
251 260anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
267 269anti-parallel
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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 310first strand
Strand 2
A
355 368anti-parallel
Strand 3
A
335 342anti-parallel
Strand 4
A
329 332anti-parallel
Strand 5
A
373 378anti-parallel
Strand 6
A
381 393anti-parallel
Strand 7
A
299 310anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
349 350anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
75 80anti-parallel
Strand 3
B
11 17parallel
Strand 4
B
100 106parallel
Strand 5
B
130 135parallel
Strand 6
B
169 171parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
62 63anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
291 293anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
251 260anti-parallel
Strand 5
B
263 265anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
291 293anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
251 260anti-parallel
Strand 5
B
273 278anti-parallel
Strand 6
B
224 230anti-parallel
Strand 7
B
216 220anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
251 260anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
267 269anti-parallel
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There are 7 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 310first strand
Strand 2
B
355 368anti-parallel
Strand 3
B
335 342anti-parallel
Strand 4
B
329 332anti-parallel
Strand 5
B
373 378anti-parallel
Strand 6
B
381 393anti-parallel
Strand 7
B
299 310anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 323first strand
Strand 2
B
349 350anti-parallel
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