Analysis of interatomic Contacts of Structural Units in PDB entry:
1D8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D8V entry

There is 1 chain in PDB entry 1D8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ASN 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1D8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
42 46Right-handed alpha
Helix 3
3
A
88 94Right-handed alpha
Helix 4
4
A
108 117Right-handed alpha
Helix 5
5
A
119 123Right-handed 310
Helix 6
6
A
126 139Right-handed alpha
Helix 7
7
A
143 156Right-handed alpha
Helix 8
8
A
156 162Right-handed alpha
Helix 9
9
A
162 172Right-handed alpha
Helix 10
10
A
180 204Right-handed alpha
Helix 11
11
A
243 249Right-handed 310
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There are 3 sheets in PDB entry 1D8V. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
47 53parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
71 76anti-parallel
Strand 5
A
79 84anti-parallel
Strand 6
A
99 106parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
238 239parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 215first strand
Strand 2
A
219 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il