Analysis of interatomic Contacts of Structural Units in PDB entry:
1D9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D9D entry

There are 2 chains in PDB entry 1D9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 DA 1004 DA 1004
A
 MET 324HIS 928
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1D9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
335 349Right-handed alpha
Helix 2
2
A
397 411Right-handed alpha
Helix 3
3
A
420 430Right-handed alpha
Helix 4
4
A
442 450Right-handed alpha
Helix 5
5
A
457 467Right-handed alpha
Helix 6
6
A
472 478Right-handed alpha
Helix 7
7
A
479 483Right-handed 310
Helix 8
8
A
485 489Right-handed 310
Helix 9
9
A
490 516Right-handed alpha
Helix 10
10
A
519 529Right-handed alpha
Helix 11
11
A
529 544Right-handed alpha
Helix 12
12
A
548 574Right-handed alpha
Helix 13
13
A
586 591Right-handed alpha
Helix 14
14
A
612 618Right-handed alpha
Helix 15
15
A
621 640Right-handed alpha
Helix 16
16
A
643 647Right-handed 310
Helix 17
17
A
675 679Right-handed 310
Helix 18
18
A
683 692Right-handed alpha
Helix 19
19
A
708 718Right-handed alpha
Helix 20
20
A
720 729Right-handed alpha
Helix 21
21
A
732 742Right-handed alpha
Helix 22
22
A
750 766Right-handed alpha
Helix 23
23
A
769 778Right-handed alpha
Helix 24
24
A
782 795Right-handed alpha
Helix 25
25
A
795 813Right-handed alpha
Helix 26
26
A
832 871Right-handed alpha
Helix 27
27
A
892 907Right-handed alpha
Helix 28
28
A
923 928Right-handed alpha
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There are 4 sheets in PDB entry 1D9D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
379 384parallel
Strand 3
A
368 376anti-parallel
Strand 4
A
352 358anti-parallel
Strand 5
A
416 418parallel
Strand 6
A
438 441parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 660first strand
Strand 2
A
670 672anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 880first strand
Strand 2
A
883 889anti-parallel
Strand 3
A
699 706anti-parallel
Strand 4
A
916 921anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 816first strand
Strand 2
A
822 824anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il