Analysis of interatomic Contacts of Structural Units in PDB entry:
1D9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D9E entry

There are 4 chains in PDB entry 1D9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001LYS 1284
B
 MET 2001LYS 2284
C
 MET 3001LYS 3284
D
 MET 4001LYS 4284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1D9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1030 1049Right-handed alpha
Helix 2
2
A
1072 1089Right-handed alpha
Helix 3
3
A
1098 1100Right-handed 310
Helix 4
4
A
1101 1107Right-handed alpha
Helix 5
5
A
1115 1119Right-handed 310
Helix 6
6
A
1121 1131Right-handed alpha
Helix 7
7
A
1144 1146Right-handed 310
Helix 8
8
A
1147 1158Right-handed alpha
Helix 9
9
A
1182 1191Right-handed alpha
Helix 10
10
A
1200 1204Right-handed alpha
Helix 11
11
A
1220 1232Right-handed alpha
Helix 12
12
A
1259 1277Right-handed alpha
Helix 13
13
B
2030 2049Right-handed alpha
Helix 14
14
B
2072 2089Right-handed alpha
Helix 15
15
B
2101 2109Right-handed alpha
Helix 16
16
B
2115 2119Right-handed 310
Helix 17
17
B
2121 2131Right-handed alpha
Helix 18
18
B
2144 2146Right-handed 310
Helix 19
19
B
2147 2158Right-handed alpha
Helix 20
20
B
2182 2190Right-handed alpha
Helix 21
21
B
2200 2204Right-handed alpha
Helix 22
22
B
2220 2232Right-handed alpha
Helix 23
23
B
2259 2276Right-handed alpha
Helix 24
24
C
3030 3049Right-handed alpha
Helix 25
25
C
3072 3089Right-handed alpha
Helix 26
26
C
3098 3100Right-handed 310
Helix 27
27
C
3101 3107Right-handed alpha
Helix 28
28
C
3115 3119Right-handed 310
Helix 29
29
C
3121 3131Right-handed alpha
Helix 30
30
C
3144 3146Right-handed 310
Helix 31
31
C
3147 3158Right-handed alpha
Helix 32
32
C
3182 3191Right-handed alpha
Helix 33
33
C
3220 3232Right-handed alpha
Helix 34
34
C
3259 3277Right-handed alpha
Helix 35
35
D
4030 4049Right-handed alpha
Helix 36
36
D
4072 4088Right-handed alpha
Helix 37
37
D
4098 4100Right-handed 310
Helix 38
38
D
4101 4109Right-handed alpha
Helix 39
39
D
4121 4132Right-handed alpha
Helix 40
40
D
4144 4146Right-handed 310
Helix 41
41
D
4147 4158Right-handed alpha
Helix 42
42
D
4182 4191Right-handed alpha
Helix 43
43
D
4220 4232Right-handed alpha
Helix 44
44
D
4259 4277Right-handed alpha
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There are 3 sheets in PDB entry 1D9E. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1006 1008first strand
Strand 2
A
1011 1013anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1020 1027first strand
Strand 2
A
1052 1057parallel
Strand 3
A
1091 1095parallel
Strand 4
A
1111 1114parallel
Strand 5
A
1134 1138parallel
Strand 6
A
1163 1167parallel
Strand 7
A
1196 1199parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1170 1171first strand
Strand 2
A
1177 1178anti-parallel
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