Analysis of interatomic Contacts of Structural Units in PDB entry:
1D9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D9Q entry

There are 4 chains in PDB entry 1D9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 18ALA 357
B
 TYR 16ALA 357
C
 ILE 18ALA 357
D
 GLU 17ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 1D9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
35 58Right-handed alpha
Helix 3
3
A
58 63Right-handed alpha
Helix 4
4
A
79 93Right-handed alpha
Helix 5
5
A
167 178Right-handed alpha
Helix 6
6
A
237 241Right-handed 310
Helix 7
7
A
240 244Right-handed 310
Helix 8
8
A
245 256Right-handed alpha
Helix 9
9
A
272 284Right-handed alpha
Helix 10
10
A
305 316Right-handed alpha
Helix 11
11
A
327 330Right-handed 310
Helix 12
12
A
345 356Right-handed alpha
Helix 13
13
B
20 31Right-handed alpha
Helix 14
14
B
35 58Right-handed alpha
Helix 15
15
B
58 63Right-handed alpha
Helix 16
16
B
78 93Right-handed alpha
Helix 17
17
B
133 137Right-handed 310
Helix 18
18
B
167 178Right-handed alpha
Helix 19
19
B
179 183Right-handed alpha
Helix 20
20
B
237 241Right-handed 310
Helix 21
21
B
240 244Right-handed 310
Helix 22
22
B
245 256Right-handed alpha
Helix 23
23
B
272 284Right-handed alpha
Helix 24
24
B
305 316Right-handed alpha
Helix 25
25
B
327 330Right-handed 310
Helix 26
26
B
345 356Right-handed alpha
Helix 27
27
C
20 31Right-handed alpha
Helix 28
28
C
35 58Right-handed alpha
Helix 29
29
C
58 63Right-handed alpha
Helix 30
30
C
76 93Right-handed alpha
Helix 31
31
C
133 137Right-handed 310
Helix 32
32
C
167 178Right-handed alpha
Helix 33
33
C
237 241Right-handed 310
Helix 34
34
C
240 244Right-handed 310
Helix 35
35
C
245 256Right-handed alpha
Helix 36
36
C
272 284Right-handed alpha
Helix 37
37
C
305 316Right-handed alpha
Helix 38
38
C
327 330Right-handed 310
Helix 39
39
C
345 357Right-handed alpha
Helix 40
40
D
20 31Right-handed alpha
Helix 41
41
D
35 58Right-handed alpha
Helix 42
42
D
58 63Right-handed alpha
Helix 43
43
D
77 93Right-handed alpha
Helix 44
44
D
167 178Right-handed alpha
Helix 45
45
D
237 241Right-handed 310
Helix 46
46
D
240 244Right-handed 310
Helix 47
47
D
245 256Right-handed alpha
Helix 48
48
D
272 284Right-handed alpha
Helix 49
49
D
305 316Right-handed alpha
Helix 50
50
D
327 330Right-handed 310
Helix 51
51
D
345 357Right-handed alpha
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There are 8 sheets in PDB entry 1D9Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
122 126anti-parallel
Strand 4
A
140 147anti-parallel
Strand 5
A
184 192anti-parallel
Strand 6
A
196 201anti-parallel
Strand 7
A
207 212anti-parallel
Strand 8
A
217 222anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
233 235parallel
Strand 3
A
286 289parallel
Strand 4
A
341 344anti-parallel
Strand 5
A
319 321anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 102first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
122 126anti-parallel
Strand 4
B
140 147anti-parallel
Strand 5
B
184 192anti-parallel
Strand 6
B
196 201anti-parallel
Strand 7
B
206 212anti-parallel
Strand 8
B
217 222anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
233 235parallel
Strand 3
B
286 289parallel
Strand 4
B
341 344anti-parallel
Strand 5
B
319 321anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 102first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
122 126anti-parallel
Strand 4
C
140 147anti-parallel
Strand 5
C
184 192anti-parallel
Strand 6
C
196 201anti-parallel
Strand 7
C
206 212anti-parallel
Strand 8
C
217 222anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
233 235parallel
Strand 3
C
286 289parallel
Strand 4
C
341 344anti-parallel
Strand 5
C
319 321anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 102first strand
Strand 2
D
111 116anti-parallel
Strand 3
D
122 126anti-parallel
Strand 4
D
140 147anti-parallel
Strand 5
D
184 192anti-parallel
Strand 6
D
196 201anti-parallel
Strand 7
D
207 212anti-parallel
Strand 8
D
217 222anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
266 267first strand
Strand 2
D
233 235parallel
Strand 3
D
286 289parallel
Strand 4
D
341 344anti-parallel
Strand 5
D
319 321anti-parallel
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