Analysis of interatomic Contacts of Structural Units in PDB entry:
1DAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DAA entry

There are 2 chains in PDB entry 1DAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 277
B
 GLY 1PRO 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1DAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
22 26Right-handed alpha
Helix 3
3
A
44 57Right-handed alpha
Helix 4
4
A
66 80Right-handed alpha
Helix 5
5
A
122 127Right-handed alpha
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
A
204 215Right-handed alpha
Helix 8
8
A
227 231Right-handed alpha
Helix 9
9
A
263 274Right-handed alpha
Helix 10
10
B
12 14Right-handed 310
Helix 11
11
B
22 25Right-handed alpha
Helix 12
12
B
44 58Right-handed alpha
Helix 13
13
B
66 80Right-handed alpha
Helix 14
14
B
122 127Right-handed alpha
Helix 15
15
B
150 162Right-handed alpha
Helix 16
16
B
204 215Right-handed alpha
Helix 17
17
B
227 232Right-handed alpha
Helix 18
18
B
263 275Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1DAA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
8 11anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 36first strand
Strand 2
A
85 92anti-parallel
Strand 3
A
110 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
129 135parallel
Strand 3
A
248 251parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
182 187anti-parallel
Strand 3
A
235 240anti-parallel
Strand 4
A
244 247anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
8 11anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 36first strand
Strand 2
B
85 92anti-parallel
Strand 3
B
110 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 170first strand
Strand 2
B
129 135parallel
Strand 3
B
248 251parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
235 240anti-parallel
Strand 4
B
244 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il