Analysis of interatomic Contacts of Structural Units in PDB entry:
1DAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DAB entry

There is 1 chain in PDB entry 1DAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1PRO 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1DAB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
372 376Right-handed 310
Helix 2
2
A
456 459Right-handed 310
Helix 3
3
A
508 510Right-handed 310
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There are 3 sheets in PDB entry 1DAB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 28 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 536first strand
Strand 2
A
518 523parallel
Strand 3
A
512 515parallel
Strand 4
A
518 523parallel
Strand 5
A
529 532anti-parallel
Strand 6
A
491 495anti-parallel
Strand 7
A
463 470parallel
Strand 8
A
438 446parallel
Strand 9
A
412 420parallel
Strand 10
A
396 402parallel
Strand 11
A
379 384parallel
Strand 12
A
349 353parallel
Strand 13
A
325 330parallel
Strand 14
A
294 298parallel
Strand 15
A
270 274parallel
Strand 16
A
216 225parallel
Strand 17
A
277 279parallel
Strand 18
A
301 313parallel
Strand 19
A
334 343parallel
Strand 20
A
358 364parallel
Strand 21
A
388 391parallel
Strand 22
A
405 408parallel
Strand 23
A
424 427parallel
Strand 24
A
449 455parallel
Strand 25
A
460 461anti-parallel
Strand 26
A
449 455anti-parallel
Strand 27
A
473 480parallel
Strand 28
A
503 506parallel
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There are 20 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
45 57parallel
Strand 3
A
17 19parallel
Strand 4
A
45 57parallel
Strand 5
A
79 89parallel
Strand 6
A
105 110parallel
Strand 7
A
128 132parallel
Strand 8
A
149 152parallel
Strand 9
A
184 189parallel
Strand 10
A
207 212parallel
Strand 11
A
261 267parallel
Strand 12
A
284 290parallel
Strand 13
A
301 313parallel
Strand 14
A
277 279parallel
Strand 15
A
216 225parallel
Strand 16
A
192 203parallel
Strand 17
A
165 170parallel
Strand 18
A
136 140parallel
Strand 19
A
114 119parallel
Strand 20
A
79 89parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
34 37parallel
Strand 3
A
60 63parallel
Strand 4
A
92 95parallel
Strand 5
A
122 124parallel
Strand 6
A
143 144parallel
Strand 7
A
173 176parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il