Analysis of interatomic Contacts of Structural Units in PDB entry:
1DAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DAP entry

There are 2 chains in PDB entry 1DAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 320
B
 MET 1VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1DAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 24Right-handed alpha
Helix 2
2
A
49 58Right-handed 310
Helix 3
3
A
71 79Right-handed alpha
Helix 4
4
A
92 109Right-handed 310
Helix 5
5
A
123 134Right-handed alpha
Helix 6
6
A
150 158Right-handed alpha
Helix 7
7
A
173 181Right-handed alpha
Helix 8
8
A
189 192Right-handed alpha
Helix 9
9
A
203 214Right-handed 310
Helix 10
10
A
232 238Right-handed alpha
Helix 11
11
A
270 290Right-handed alpha
Helix 12
12
A
299 301Right-handed 310
Helix 13
13
A
304 307Right-handed 310
Helix 14
14
A
312 319Right-handed alpha
Helix 15
15
B
13 23Right-handed alpha
Helix 16
16
B
49 58Right-handed 310
Helix 17
17
B
71 81Right-handed alpha
Helix 18
18
B
92 109Right-handed 310
Helix 19
19
B
123 134Right-handed alpha
Helix 20
20
B
150 158Right-handed alpha
Helix 21
21
B
173 181Right-handed alpha
Helix 22
22
B
189 192Right-handed alpha
Helix 23
23
B
203 214Right-handed 310
Helix 24
24
B
232 238Right-handed alpha
Helix 25
25
B
270 290Right-handed alpha
Helix 26
26
B
299 301Right-handed 310
Helix 27
27
B
304 307Right-handed 310
Helix 28
28
B
312 318Right-handed alpha
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There are 7 sheets in PDB entry 1DAP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
61 64parallel
Strand 3
A
4 9parallel
Strand 4
A
28 35parallel
Strand 5
A
46 48parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
295 298parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
244 253anti-parallel
Strand 3
A
258 267anti-parallel
Strand 4
B
257 267anti-parallel
Strand 5
B
244 254anti-parallel
Strand 6
B
138 144anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 171first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
225 229parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
61 64parallel
Strand 3
B
4 9parallel
Strand 4
B
28 35parallel
Strand 5
B
46 48parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
295 297parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 171first strand
Strand 2
B
193 200anti-parallel
Strand 3
B
224 229parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il