Analysis of interatomic Contacts of Structural Units in PDB entry:
1DAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DAR entry

There is 1 chain in PDB entry 1DAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1DAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
91 100Right-handed alpha
Helix 4
4
A
116 127Right-handed alpha
Helix 5
5
A
146 155Right-handed alpha
Helix 6
6
A
171 173Right-handed 310
Helix 7
7
A
203 222Right-handed 310
Helix 8
8
A
225 233Right-handed alpha
Helix 9
9
A
239 251Right-handed alpha
Helix 10
10
A
263 265Right-handed 310
Helix 11
11
A
269 279Right-handed alpha
Helix 12
12
A
539 551Right-handed alpha
Helix 13
13
A
579 595Right-handed alpha
Helix 14
14
A
619 627Right-handed alpha
Helix 15
15
A
655 663Right-handed alpha
Helix 16
16
A
681 687Right-handed alpha
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There are 10 sheets in PDB entry 1DAR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
256 260parallel
Strand 3
A
131 137parallel
Strand 4
A
103 109parallel
Strand 5
A
12 19parallel
Strand 6
A
77 82parallel
Strand 7
A
69 74anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
176 179anti-parallel
Strand 3
A
184 188anti-parallel
Strand 4
A
196 199anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
298 301anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
340 343anti-parallel
Strand 3
A
388 391anti-parallel
Strand 4
A
310 313anti-parallel
Strand 5
A
325 332anti-parallel
Strand 6
A
374 378anti-parallel
Strand 7
A
354 358anti-parallel
Strand 8
A
363 366anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
323 327anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
368 370anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
470 472anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
600 611anti-parallel
Strand 3
A
668 678anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 499first strand
Strand 2
A
506 516anti-parallel
Strand 3
A
563 570anti-parallel
Strand 4
A
523 527parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 612first strand
Strand 2
A
641 648anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il