Analysis of interatomic Contacts of Structural Units in PDB entry:
1DBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DBH entry

There is 1 chain in PDB entry 1DBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 198LEU 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1DBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
201 224Right-handed alpha
Helix 2
2
A
228 232Right-handed alpha
Helix 3
3
A
239 246Right-handed alpha
Helix 4
4
A
249 267Right-handed alpha
Helix 5
5
A
280 289Right-handed alpha
Helix 6
6
A
293 302Right-handed alpha
Helix 7
7
A
307 316Right-handed alpha
Helix 8
8
A
320 327Right-handed alpha
Helix 9
9
A
331 337Right-handed alpha
Helix 10
10
A
339 363Right-handed alpha
Helix 11
11
A
367 392Right-handed alpha
Helix 12
12
A
394 402Right-handed alpha
Helix 13
13
A
419 424Right-handed 310
Helix 14
14
A
426 428Right-handed 310
Helix 15
15
A
437 439Right-handed 310
Helix 16
16
A
531 545Right-handed alpha
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There are 3 sheets in PDB entry 1DBH. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 450first strand
Strand 2
A
459 461anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
513 516anti-parallel
Strand 3
A
524 527anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
488 492anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il