Analysis of interatomic Contacts of Structural Units in PDB entry:
1DBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DBI entry

There is 1 chain in PDB entry 1DBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 1TYR 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1DBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
15 18Right-handed 310
Helix 3
3
A
19 24Right-handed alpha
Helix 4
4
A
71 82Right-handed alpha
Helix 5
5
A
112 126Right-handed alpha
Helix 6
6
A
141 154Right-handed alpha
Helix 7
7
A
224 242Right-handed alpha
Helix 8
8
A
245 256Right-handed alpha
Helix 9
9
A
273 279Right-handed alpha
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There are 2 sheets in PDB entry 1DBI. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
98 103parallel
Strand 3
A
34 39parallel
Strand 4
A
130 133parallel
Strand 5
A
157 161parallel
Strand 6
A
180 185parallel
Strand 7
A
203 206parallel
Strand 8
A
270 271parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
218 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il