Analysis of interatomic Contacts of Structural Units in PDB entry:
1DBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DBX entry

There are 2 chains in PDB entry 1DBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLU 158
B
 THR 2GLU 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1DBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
31 38Right-handed alpha
Helix 3
3
A
40 43Right-handed 310
Helix 4
4
A
71 79Right-handed alpha
Helix 5
5
A
88 97Right-handed alpha
Helix 6
6
A
119 123Right-handed 310
Helix 7
7
A
140 149Right-handed alpha
Helix 8
8
B
2 12Right-handed alpha
Helix 9
9
B
31 38Right-handed alpha
Helix 10
10
B
40 42Right-handed 310
Helix 11
11
B
71 79Right-handed alpha
Helix 12
12
B
88 97Right-handed alpha
Helix 13
13
B
119 123Right-handed 310
Helix 14
14
B
140 149Right-handed alpha
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There are 4 sheets in PDB entry 1DBX. Click on sheet of interest to get list of strands forming it: A, B, C, C1,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
126 129anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
114 117parallel
Strand 5
A
151 153parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
114 117parallel
Strand 3
B
55 65parallel
Strand 4
B
44 52anti-parallel
Strand 5
B
84 86anti-parallel
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There are 7 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
114 117parallel
Strand 3
B
55 65parallel
Strand 4
B
44 52anti-parallel
Strand 5
B
126 129parallel
Strand 6
B
135 139anti-parallel
Strand 7
B
16 19anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il