Analysis of interatomic Contacts of Structural Units in PDB entry:
1DC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DC6 entry

There are 2 chains in PDB entry 1DC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 0LYS 330
B
 THR 0LYS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1DC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 19Right-handed alpha
Helix 2
2
A
20 22Right-handed 310
Helix 3
3
A
36 46Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
83 88Right-handed 310
Helix 6
6
A
101 106Right-handed alpha
Helix 7
7
A
107 109Right-handed 310
Helix 8
8
A
133 137Right-handed 310
Helix 9
9
A
148 166Right-handed alpha
Helix 10
10
A
192 197Right-handed 310
Helix 11
11
A
198 202Right-handed 310
Helix 12
12
A
213 218Right-handed alpha
Helix 13
13
A
219 222Right-handed 310
Helix 14
14
A
251 265Right-handed alpha
Helix 15
15
A
279 284Right-handed 310
Helix 16
16
A
314 328Right-handed alpha
Helix 17
17
B
9 20Right-handed alpha
Helix 18
18
B
36 46Right-handed alpha
Helix 19
19
B
78 82Right-handed 310
Helix 20
20
B
83 87Right-handed 310
Helix 21
21
B
101 106Right-handed alpha
Helix 22
22
B
106 111Right-handed alpha
Helix 23
23
B
133 137Right-handed 310
Helix 24
24
B
150 166Right-handed alpha
Helix 25
25
B
192 197Right-handed 310
Helix 26
26
B
212 218Right-handed alpha
Helix 27
27
B
219 222Right-handed 310
Helix 28
28
B
251 264Right-handed alpha
Helix 29
29
B
279 284Right-handed 310
Helix 30
30
B
295 297Right-handed 310
Helix 31
31
B
314 329Right-handed alpha
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There are 6 sheets in PDB entry 1DC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
1 6parallel
Strand 6
A
91 94parallel
Strand 7
A
115 118parallel
Strand 8
A
143 145parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
225 232anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
238 246anti-parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
290 293anti-parallel
Strand 7
A
271 274parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
225 232anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
238 246anti-parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
298 301anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
1 6parallel
Strand 6
B
91 94parallel
Strand 7
B
115 118parallel
Strand 8
B
143 145parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
167 176parallel
Strand 4
B
238 246anti-parallel
Strand 5
B
304 311anti-parallel
Strand 6
B
290 293anti-parallel
Strand 7
B
271 274parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
225 231anti-parallel
Strand 3
B
167 176parallel
Strand 4
B
238 246anti-parallel
Strand 5
B
304 311anti-parallel
Strand 6
B
298 301anti-parallel
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