Analysis of interatomic Contacts of Structural Units in PDB entry:
1DCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DCI entry

There are 3 chains in PDB entry 1DCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 53LEU 327
B
 ALA 53LEU 327
C
 ALA 53LEU 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 1DCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 76Right-handed 310
Helix 2
2
A
82 97Right-handed alpha
Helix 3
3
A
119 126Right-handed alpha
Helix 4
4
A
134 157Right-handed alpha
Helix 5
5
A
172 180Right-handed 310
Helix 6
6
A
195 199Right-handed 310
Helix 7
7
A
207 213Right-handed alpha
Helix 8
8
A
218 227Right-handed alpha
Helix 9
9
A
233 239Right-handed alpha
Helix 10
10
A
249 265Right-handed alpha
Helix 11
11
A
268 283Right-handed alpha
Helix 12
12
A
286 300Right-handed alpha
Helix 13
13
A
304 314Right-handed alpha
Helix 14
14
A
319 321Right-handed 310
Helix 15
15
B
74 76Right-handed 310
Helix 16
16
B
82 97Right-handed alpha
Helix 17
17
B
119 127Right-handed alpha
Helix 18
18
B
134 157Right-handed alpha
Helix 19
19
B
172 180Right-handed 310
Helix 20
20
B
195 199Right-handed 310
Helix 21
21
B
207 213Right-handed alpha
Helix 22
22
B
218 227Right-handed alpha
Helix 23
23
B
233 239Right-handed alpha
Helix 24
24
B
249 265Right-handed alpha
Helix 25
25
B
268 283Right-handed alpha
Helix 26
26
B
286 300Right-handed alpha
Helix 27
27
B
304 315Right-handed alpha
Helix 28
28
B
319 321Right-handed 310
Helix 29
29
C
74 76Right-handed 310
Helix 30
30
C
82 97Right-handed alpha
Helix 31
31
C
119 127Right-handed alpha
Helix 32
32
C
134 157Right-handed alpha
Helix 33
33
C
172 180Right-handed 310
Helix 34
34
C
195 199Right-handed 310
Helix 35
35
C
207 213Right-handed alpha
Helix 36
36
C
218 227Right-handed alpha
Helix 37
37
C
233 239Right-handed alpha
Helix 38
38
C
249 265Right-handed alpha
Helix 39
39
C
268 283Right-handed alpha
Helix 40
40
C
286 300Right-handed alpha
Helix 41
41
C
304 315Right-handed alpha
Helix 42
42
C
319 321Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1DCI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
183 187parallel
Strand 3
A
161 166parallel
Strand 4
A
103 108parallel
Strand 5
A
66 71parallel
Strand 6
A
57 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
191 193parallel
Strand 3
A
230 232anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
183 187parallel
Strand 3
B
161 166parallel
Strand 4
B
103 108parallel
Strand 5
B
66 71parallel
Strand 6
B
57 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
191 193parallel
Strand 3
B
230 232anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
183 187parallel
Strand 3
C
161 166parallel
Strand 4
C
103 108parallel
Strand 5
C
66 71parallel
Strand 6
C
57 63anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 171first strand
Strand 2
C
191 193parallel
Strand 3
C
230 232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il