Analysis of interatomic Contacts of Structural Units in PDB entry:
1DDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DDE entry

There is 1 chain in PDB entry 1DDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 115LEU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1DDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
115 132Right-handed alpha
Helix 2
2
A
133 135Right-handed 310
Helix 3
3
A
136 146Right-handed alpha
Helix 4
4
A
149 156Right-handed alpha
Helix 5
5
A
166 173Right-handed alpha
Helix 6
6
A
175 185Right-handed alpha
Helix 7
7
A
240 244Right-handed 310
Helix 8
8
A
247 255Right-handed alpha
Helix 9
9
A
266 276Right-handed alpha
Helix 10
10
A
290 301Right-handed alpha
Helix 11
11
A
311 326Right-handed alpha
Helix 12
12
A
327 329Right-handed 310
Helix 13
13
A
345 354Right-handed alpha
Helix 14
14
A
353 364Right-handed alpha
Helix 15
15
A
368 377Right-handed alpha
Helix 16
16
A
378 380Right-handed 310
Helix 17
17
A
384 400Right-handed alpha
Helix 18
18
A
404 420Right-handed alpha
Helix 19
19
A
423 427Right-handed 310
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There are 3 sheets in PDB entry 1DDE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
230 232anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
196 198anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
261 264parallel
Strand 3
A
303 310parallel
Strand 4
A
334 342parallel
Strand 5
A
366 367anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il