Analysis of interatomic Contacts of Structural Units in PDB entry:
1DEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DEU entry

There are 2 chains in PDB entry 1DEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6VAL 242
B
 PHE 4VAL 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1DEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
2
A
30 48Right-handed alpha
Helix 2
3
A
58 66Right-handed alpha
Helix 3
4
A
75 86Right-handed alpha
Helix 4
5
A
91 94Right-handed 310
Helix 5
6
A
104 109Right-handed alpha
Helix 6
7
A
137 149Right-handed alpha
Helix 7
8
A
158 163Right-handed alpha
Helix 8
9
A
218 223Right-handed alpha
Helix 9
10
A
224 227Right-handed 310
Helix 10
12
B
30 48Right-handed alpha
Helix 11
13
B
58 66Right-handed alpha
Helix 12
14
B
75 86Right-handed alpha
Helix 13
15
B
91 94Right-handed 310
Helix 14
16
B
104 109Right-handed alpha
Helix 15
17
B
137 149Right-handed alpha
Helix 16
18
B
158 163Right-handed alpha
Helix 17
19
B
218 223Right-handed alpha
Helix 18
20
B
224 227Right-handed 310
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There are 8 sheets in PDB entry 1DEU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
211 215parallel
Strand 3
A
193 199anti-parallel
Strand 4
A
180 190anti-parallel
Strand 5
A
5 6anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
211 215parallel
Strand 3
A
193 199anti-parallel
Strand 4
A
180 190anti-parallel
Strand 5
A
151 155anti-parallel
Strand 6
A
235 240anti-parallel
Strand 7
A
129 135anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
73 74anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
117 120anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
211 215parallel
Strand 3
B
193 199anti-parallel
Strand 4
B
180 190anti-parallel
Strand 5
B
5 6anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
211 215parallel
Strand 3
B
193 199anti-parallel
Strand 4
B
180 190anti-parallel
Strand 5
B
151 155anti-parallel
Strand 6
B
235 240anti-parallel
Strand 7
B
129 135anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 70first strand
Strand 2
B
73 74anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 114first strand
Strand 2
B
117 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il