Analysis of interatomic Contacts of Structural Units in PDB entry:
1DEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DEV entry

There are 4 chains in PDB entry 1DEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 263MET 456
B
 SER 669VAL 709
C
 LEU 261MET 456
D
 SER 669VAL 707
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1DEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
322 333Right-handed alpha
Helix 2
2
A
359 367Right-handed alpha
Helix 3
3
A
386 398Right-handed alpha
Helix 4
4
A
400 408Right-handed alpha
Helix 5
5
A
409 411Right-handed 310
Helix 6
6
A
430 434Right-handed 310
Helix 7
7
A
443 455Right-handed alpha
Helix 8
8
B
676 680Right-handed 310
Helix 9
9
B
685 691Right-handed alpha
Helix 10
10
C
322 331Right-handed alpha
Helix 11
11
C
359 367Right-handed alpha
Helix 12
12
C
386 398Right-handed alpha
Helix 13
13
C
401 407Right-handed alpha
Helix 14
14
C
408 411Right-handed 310
Helix 15
15
C
443 455Right-handed alpha
Helix 16
16
D
676 680Right-handed 310
Helix 17
17
D
685 691Right-handed alpha
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There are 8 sheets in PDB entry 1DEV. Click on sheet of interest to get list of strands forming it: A, B, B1, C, D, E, E1, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
B
702 705anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
355 358anti-parallel
Strand 3
A
413 417anti-parallel
Strand 4
A
437 442anti-parallel
Strand 5
A
275 281anti-parallel
Strand 6
A
284 285anti-parallel
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There are 6 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
355 358anti-parallel
Strand 3
A
413 417anti-parallel
Strand 4
A
437 442anti-parallel
Strand 5
A
275 281anti-parallel
Strand 6
A
290 292anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
296 300parallel
Strand 3
A
336 341anti-parallel
Strand 4
A
344 349anti-parallel
Strand 5
A
381 385anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 264first strand
Strand 2
D
705 706anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
374 376first strand
Strand 2
C
355 358anti-parallel
Strand 3
C
413 417anti-parallel
Strand 4
C
437 442anti-parallel
Strand 5
C
275 281anti-parallel
Strand 6
C
284 285anti-parallel
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There are 6 strands in E1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
374 376first strand
Strand 2
C
355 358anti-parallel
Strand 3
C
413 417anti-parallel
Strand 4
C
437 442anti-parallel
Strand 5
C
275 281anti-parallel
Strand 6
C
290 292anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
310 312first strand
Strand 2
C
296 300parallel
Strand 3
C
336 341anti-parallel
Strand 4
C
344 349anti-parallel
Strand 5
C
381 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il