Analysis of interatomic Contacts of Structural Units in PDB entry:
1DEW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DEW entry

There are 8 chains in PDB entry 1DEW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 G 1 C 6
X
 C 8 G 15
Y
 G 17 C 30
U
 G 31 C 36
U
 C 38 G 45
V
 G 47 C 60
A
 GLY 41LEU 318
B
 GLU 40LEU 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1DEW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 78Right-handed alpha
Helix 2
2
A
79 88Right-handed alpha
Helix 3
3
A
105 115Right-handed 310
Helix 4
4
A
148 152Right-handed 310
Helix 5
5
A
176 180Right-handed 310
Helix 6
6
A
181 201Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
222 227Right-handed alpha
Helix 9
9
A
233 247Right-handed alpha
Helix 10
10
A
252 257Right-handed alpha
Helix 11
11
A
269 273Right-handed 310
Helix 12
12
A
289 293Right-handed 310
Helix 13
13
B
71 78Right-handed alpha
Helix 14
14
B
79 88Right-handed alpha
Helix 15
15
B
105 110Right-handed 310
Helix 16
16
B
176 180Right-handed 310
Helix 17
17
B
181 203Right-handed alpha
Helix 18
18
B
216 220Right-handed 310
Helix 19
19
B
233 247Right-handed alpha
Helix 20
20
B
252 257Right-handed alpha
Helix 21
21
B
272 277Right-handed alpha
Helix 22
22
B
289 293Right-handed 310
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There are 4 sheets in PDB entry 1DEW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
62 68parallel
Strand 5
A
312 316anti-parallel
Strand 6
A
295 300anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
157 161anti-parallel
Strand 3
A
166 171anti-parallel
Strand 4
A
205 210parallel
Strand 5
A
283 287anti-parallel
Strand 6
A
250 251anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
131 135anti-parallel
Strand 3
B
91 95anti-parallel
Strand 4
B
62 68parallel
Strand 5
B
312 316anti-parallel
Strand 6
B
295 300anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
157 161anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
205 210parallel
Strand 5
B
283 287anti-parallel
Strand 6
B
250 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il