Analysis of interatomic Contacts of Structural Units in PDB entry:
1DGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DGH entry

There are 6 chains in PDB entry 1DGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ASN 501
B
 SER 4VAL 74
B
 ALA 76ASN 501
C
 SER 4ASN 501
D
 SER 4VAL 74
D
 ALA 76ASN 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 1DGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
54 65Right-handed alpha
Helix 3
3
A
97 101Right-handed 310
Helix 4
4
A
157 159Right-handed 310
Helix 5
5
A
160 169Right-handed alpha
Helix 6
6
A
178 189Right-handed alpha
Helix 7
7
A
192 200Right-handed alpha
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
246 257Right-handed alpha
Helix 10
10
A
259 271Right-handed alpha
Helix 11
11
A
285 292Right-handed alpha
Helix 12
12
A
324 329Right-handed alpha
Helix 13
13
A
348 366Right-handed alpha
Helix 14
14
A
369 373Right-handed 310
Helix 15
15
A
373 377Right-handed 310
Helix 16
16
A
415 419Right-handed 310
Helix 17
17
A
440 449Right-handed alpha
Helix 18
18
A
452 468Right-handed alpha
Helix 19
19
A
471 486Right-handed alpha
Helix 20
20
A
486 501Right-handed alpha
Helix 21
21
B
10 18Right-handed alpha
Helix 22
22
B
54 65Right-handed alpha
Helix 23
23
B
97 101Right-handed 310
Helix 24
24
B
157 159Right-handed 310
Helix 25
25
B
160 169Right-handed alpha
Helix 26
26
B
178 189Right-handed alpha
Helix 27
27
B
192 200Right-handed alpha
Helix 28
28
B
201 205Right-handed 310
Helix 29
29
B
246 257Right-handed alpha
Helix 30
30
B
259 271Right-handed alpha
Helix 31
31
B
285 292Right-handed alpha
Helix 32
32
B
324 329Right-handed alpha
Helix 33
33
B
348 366Right-handed alpha
Helix 34
34
B
369 373Right-handed 310
Helix 35
35
B
373 377Right-handed 310
Helix 36
36
B
415 419Right-handed 310
Helix 37
37
B
440 449Right-handed alpha
Helix 38
38
B
452 468Right-handed alpha
Helix 39
39
B
471 486Right-handed alpha
Helix 40
40
B
486 501Right-handed alpha
Helix 41
41
C
10 19Right-handed alpha
Helix 42
42
C
54 65Right-handed alpha
Helix 43
43
C
97 101Right-handed 310
Helix 44
44
C
157 159Right-handed 310
Helix 45
45
C
160 169Right-handed alpha
Helix 46
46
C
178 189Right-handed alpha
Helix 47
47
C
192 200Right-handed alpha
Helix 48
48
C
201 205Right-handed 310
Helix 49
49
C
246 257Right-handed alpha
Helix 50
50
C
259 271Right-handed alpha
Helix 51
51
C
285 292Right-handed alpha
Helix 52
52
C
324 329Right-handed alpha
Helix 53
53
C
348 366Right-handed alpha
Helix 54
54
C
369 373Right-handed 310
Helix 55
55
C
415 419Right-handed 310
Helix 56
56
C
440 450Right-handed alpha
Helix 57
57
C
452 468Right-handed alpha
Helix 58
58
C
471 486Right-handed alpha
Helix 59
59
C
486 501Right-handed alpha
Helix 60
60
D
10 18Right-handed alpha
Helix 61
61
D
54 66Right-handed alpha
Helix 62
62
D
97 101Right-handed 310
Helix 63
63
D
157 159Right-handed 310
Helix 64
64
D
160 169Right-handed alpha
Helix 65
65
D
178 189Right-handed alpha
Helix 66
66
D
192 200Right-handed alpha
Helix 67
67
D
201 205Right-handed 310
Helix 68
68
D
246 257Right-handed alpha
Helix 69
69
D
259 271Right-handed alpha
Helix 70
70
D
285 292Right-handed alpha
Helix 71
71
D
324 329Right-handed alpha
Helix 72
72
D
348 366Right-handed alpha
Helix 73
73
D
369 373Right-handed 310
Helix 74
74
D
373 377Right-handed 310
Helix 75
75
D
415 419Right-handed 310
Helix 76
76
D
440 449Right-handed alpha
Helix 77
77
D
452 468Right-handed alpha
Helix 78
78
D
471 486Right-handed alpha
Helix 79
79
D
486 501Right-handed alpha
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There are 7 sheets in PDB entry 1DGH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
C
428 431anti-parallel
Strand 3
B
423 424anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
276 284anti-parallel
Strand 5
A
311 320anti-parallel
Strand 6
A
78 87anti-parallel
Strand 7
A
106 114anti-parallel
Strand 8
A
131 138anti-parallel
Strand 9
A
141 148anti-parallel
Strand 10
A
214 215anti-parallel
Strand 11
A
229 238anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 44first strand
Strand 2
A
424 431anti-parallel
Strand 3
D
424 431anti-parallel
Strand 4
B
42 44anti-parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
229 238anti-parallel
Strand 4
B
276 284anti-parallel
Strand 5
B
311 320anti-parallel
Strand 6
B
78 87anti-parallel
Strand 7
B
106 114anti-parallel
Strand 8
B
131 138anti-parallel
Strand 9
B
141 148anti-parallel
Strand 10
B
214 215anti-parallel
Strand 11
B
229 238anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
423 424first strand
Strand 2
B
428 431anti-parallel
Strand 3
D
42 44anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 345first strand
Strand 2
C
220 223anti-parallel
Strand 3
C
229 238anti-parallel
Strand 4
C
276 284anti-parallel
Strand 5
C
311 320anti-parallel
Strand 6
C
78 87anti-parallel
Strand 7
C
106 114anti-parallel
Strand 8
C
131 138anti-parallel
Strand 9
C
141 148anti-parallel
Strand 10
C
214 215anti-parallel
Strand 11
C
229 238anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 344first strand
Strand 2
D
220 223anti-parallel
Strand 3
D
229 238anti-parallel
Strand 4
D
276 284anti-parallel
Strand 5
D
311 320anti-parallel
Strand 6
D
78 87anti-parallel
Strand 7
D
106 114anti-parallel
Strand 8
D
131 138anti-parallel
Strand 9
D
141 148anti-parallel
Strand 10
D
214 215anti-parallel
Strand 11
D
229 238anti-parallel
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