Analysis of interatomic Contacts of Structural Units in PDB entry:
1DGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DGJ entry

There is 1 chain in PDB entry 1DGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 906
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1DGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 30Right-handed alpha
Helix 2
2
A
60 62Right-handed 310
Helix 3
3
A
64 67Right-handed 310
Helix 4
4
A
75 79Right-handed 310
Helix 5
5
A
86 96Right-handed alpha
Helix 6
6
A
103 118Right-handed alpha
Helix 7
7
A
122 133Right-handed alpha
Helix 8
8
A
142 157Right-handed alpha
Helix 9
9
A
161 166Right-handed alpha
Helix 10
10
A
184 190Right-handed alpha
Helix 11
11
A
195 200Right-handed alpha
Helix 12
12
A
201 203Right-handed 310
Helix 13
13
A
227 233Right-handed alpha
Helix 14
14
A
241 245Right-handed 310
Helix 15
15
A
289 298Right-handed alpha
Helix 16
16
A
312 318Right-handed alpha
Helix 17
17
A
343 348Right-handed alpha
Helix 18
18
A
392 405Right-handed alpha
Helix 19
19
A
424 428Right-handed 310
Helix 20
20
A
431 443Right-handed alpha
Helix 21
21
A
451 458Right-handed alpha
Helix 22
22
A
496 508Right-handed alpha
Helix 23
23
A
538 558Right-handed alpha
Helix 24
24
A
560 569Right-handed alpha
Helix 25
25
A
586 607Right-handed alpha
Helix 26
26
A
658 671Right-handed alpha
Helix 27
27
A
672 675Right-handed 310
Helix 28
28
A
677 679Right-handed 310
Helix 29
29
A
704 721Right-handed alpha
Helix 30
30
A
730 737Right-handed alpha
Helix 31
31
A
800 821Right-handed alpha
Helix 32
32
A
840 844Right-handed 310
Helix 33
33
A
860 863Right-handed 310
Helix 34
34
A
869 873Right-handed 310
Helix 35
35
A
874 888Right-handed alpha
Helix 36
36
A
897 904Right-handed alpha
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There are 8 sheets in PDB entry 1DGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
14 17anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
72 74parallel
Strand 3
A
49 52anti-parallel
Strand 4
A
55 58anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
281 287anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
446 449parallel
Strand 5
A
373 378anti-parallel
Strand 6
A
384 388anti-parallel
Strand 7
A
412 416parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
220 226anti-parallel
Strand 3
A
301 306anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
267 268anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 339first strand
Strand 2
A
516 524anti-parallel
Strand 3
A
479 489parallel
Strand 4
A
465 473anti-parallel
Strand 5
A
353 361anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 626first strand
Strand 2
A
765 778anti-parallel
Strand 3
A
784 794anti-parallel
Strand 4
A
848 852parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 685first strand
Strand 2
A
646 650parallel
Strand 3
A
633 640anti-parallel
Strand 4
A
742 748anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il