Analysis of interatomic Contacts of Structural Units in PDB entry:
1DGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DGK entry

There is 1 chain in PDB entry 1DGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 ASP 16THR 913
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1DGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
N
16 26Right-handed alpha
Helix 2
2
N
27 30Right-handed 310
Helix 3
3
N
32 52Right-handed alpha
Helix 4
4
N
55 59Right-handed 310
Helix 5
5
N
115 121Right-handed alpha
Helix 6
6
N
122 142Right-handed alpha
Helix 7
7
N
184 197Right-handed alpha
Helix 8
8
N
208 221Right-handed alpha
Helix 9
9
N
243 245Right-handed 310
Helix 10
10
N
260 264Right-handed 310
Helix 11
11
N
275 284Right-handed alpha
Helix 12
12
N
293 298Right-handed alpha
Helix 13
13
N
298 316Right-handed alpha
Helix 14
14
N
319 323Right-handed 310
Helix 15
15
N
325 330Right-handed alpha
Helix 16
16
N
335 343Right-handed alpha
Helix 17
17
N
347 359Right-handed alpha
Helix 18
18
N
364 402Right-handed alpha
Helix 19
19
N
414 420Right-handed alpha
Helix 20
20
N
422 435Right-handed alpha
Helix 21
21
N
448 476Right-handed alpha
Helix 22
22
N
480 500Right-handed alpha
Helix 23
23
N
500 505Right-handed alpha
Helix 24
24
N
563 568Right-handed alpha
Helix 25
25
N
570 590Right-handed alpha
Helix 26
26
N
632 645Right-handed alpha
Helix 27
27
N
656 667Right-handed alpha
Helix 28
28
N
691 693Right-handed 310
Helix 29
29
N
708 712Right-handed 310
Helix 30
30
N
723 732Right-handed alpha
Helix 31
31
N
741 746Right-handed alpha
Helix 32
32
N
749 764Right-handed alpha
Helix 33
33
N
767 771Right-handed 310
Helix 34
34
N
784 791Right-handed alpha
Helix 35
35
N
797 808Right-handed alpha
Helix 36
36
N
812 849Right-handed alpha
Helix 37
37
N
862 868Right-handed alpha
Helix 38
38
N
870 883Right-handed alpha
Helix 39
39
N
897 912Right-handed alpha
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There are 6 sheets in PDB entry 1DGK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
64 65first strand
Strand 2
N
254 258anti-parallel
Strand 3
N
234 241anti-parallel
Strand 4
N
224 230anti-parallel
Strand 5
N
406 413parallel
Strand 6
N
438 444parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
103 112first strand
Strand 2
N
90 100anti-parallel
Strand 3
N
78 85anti-parallel
Strand 4
N
150 154parallel
Strand 5
N
203 207parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
158 159first strand
Strand 2
N
167 168anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
512 513first strand
Strand 2
N
702 706anti-parallel
Strand 3
N
682 689anti-parallel
Strand 4
N
672 678anti-parallel
Strand 5
N
854 861parallel
Strand 6
N
886 892parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
552 560first strand
Strand 2
N
538 546anti-parallel
Strand 3
N
526 533anti-parallel
Strand 4
N
597 602parallel
Strand 5
N
650 655parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
606 610first strand
Strand 2
N
613 616anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il