Analysis of interatomic Contacts of Structural Units in PDB entry:
1DGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DGP entry

There are 2 chains in PDB entry 1DGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 40ARG 338
B
 THR 40ARG 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1DGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 69Right-handed alpha
Helix 2
2
A
73 84Right-handed alpha
Helix 3
3
A
84 93Right-handed alpha
Helix 4
4
A
100 120Right-handed alpha
Helix 5
5
A
122 139Right-handed alpha
Helix 6
6
A
147 165Right-handed alpha
Helix 7
7
A
164 181Right-handed alpha
Helix 8
8
A
192 202Right-handed alpha
Helix 9
9
A
203 218Right-handed alpha
Helix 10
10
A
222 228Right-handed alpha
Helix 11
11
A
229 249Right-handed alpha
Helix 12
12
A
267 277Right-handed alpha
Helix 13
13
A
279 307Right-handed alpha
Helix 14
14
A
313 336Right-handed alpha
Helix 15
15
B
53 69Right-handed alpha
Helix 16
16
B
73 84Right-handed alpha
Helix 17
17
B
84 93Right-handed alpha
Helix 18
18
B
100 120Right-handed alpha
Helix 19
19
B
122 139Right-handed alpha
Helix 20
20
B
147 165Right-handed alpha
Helix 21
21
B
164 181Right-handed alpha
Helix 22
22
B
192 202Right-handed alpha
Helix 23
23
B
203 218Right-handed alpha
Helix 24
24
B
222 228Right-handed alpha
Helix 25
25
B
229 249Right-handed alpha
Helix 26
26
B
267 277Right-handed alpha
Helix 27
27
B
279 307Right-handed alpha
Helix 28
28
B
313 336Right-handed alpha
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There are no sheets in PDB entry 1DGP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il