Analysis of interatomic Contacts of Structural Units in PDB entry:
1DID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DID entry

There are 2 chains in PDB entry 1DID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ARG 394
B
 VAL 2ARG 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 1DID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A0
A
14 17Right-handed 310
Helix 2
A1
A
35 45Right-handed alpha
Helix 3
A2A
A
54 58Right-handed 310
Helix 4
A2
A
64 81Right-handed alpha
Helix 5
A3
A
108 128Right-handed alpha
Helix 6
A4
A
150 171Right-handed alpha
Helix 7
A5
A
195 204Right-handed alpha
Helix 8
A6A
A
217 220Right-handed alpha
Helix 9
A6B
A
219 224Right-handed 310
Helix 10
A6
A
227 236Right-handed alpha
Helix 11
A7
A
264 276Right-handed alpha
Helix 12
A8
A
301 327Right-handed alpha
Helix 13
A9
A
329 338Right-handed alpha
Helix 14
A10
A
340 344Right-handed 310
Helix 15
A11
A
354 359Right-handed 310
Helix 16
A12
A
369 374Right-handed alpha
Helix 17
A13
A
379 391Right-handed alpha
Helix 18
B0
B
14 17Right-handed 310
Helix 19
B1
B
35 45Right-handed alpha
Helix 20
B2A
B
54 58Right-handed 310
Helix 21
B2
B
64 81Right-handed alpha
Helix 22
B3
B
108 128Right-handed alpha
Helix 23
B4
B
150 171Right-handed alpha
Helix 24
B5
B
195 204Right-handed alpha
Helix 25
B6A
B
217 220Right-handed alpha
Helix 26
B6B
B
219 224Right-handed 310
Helix 27
B6
B
227 236Right-handed alpha
Helix 28
B7
B
264 276Right-handed alpha
Helix 29
B8
B
301 327Right-handed alpha
Helix 30
B9
B
329 338Right-handed alpha
Helix 31
B10
B
340 344Right-handed 310
Helix 32
B11
B
354 359Right-handed 310
Helix 33
B12
B
369 374Right-handed alpha
Helix 34
B13
B
379 391Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1DID. Click on sheet of interest to get list of strands forming it: BAA, BAB,

There are 9 strands in BAA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
48 51parallel
Strand 3
A
84 88parallel
Strand 4
A
131 135parallel
Strand 5
A
176 180parallel
Strand 6
A
210 217parallel
Strand 7
A
241 245parallel
Strand 8
A
289 292parallel
Strand 9
A
9 14parallel
Back to list of sheets
Back to top of page

There are 9 strands in BAB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 14first strand
Strand 2
B
48 51parallel
Strand 3
B
84 88parallel
Strand 4
B
131 135parallel
Strand 5
B
176 180parallel
Strand 6
B
210 217parallel
Strand 7
B
241 245parallel
Strand 8
B
289 292parallel
Strand 9
B
9 14parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il