Analysis of interatomic Contacts of Structural Units in PDB entry:
1DIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DIZ entry

There are 8 chains in PDB entry 1DIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 1 A 7
C
 T 9 T 13
D
 G 14 A 26
E
 G 1 A 7
E
 T 9 T 13
F
 G 14 A 26
A
 MET 1ALA 282
B
 MET 1ALA 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 1DIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
65 69Right-handed 310
Helix 3
3
A
70 82Right-handed alpha
Helix 4
4
A
87 92Right-handed alpha
Helix 5
5
A
91 96Right-handed alpha
Helix 6
6
A
96 101Right-handed alpha
Helix 7
7
A
112 122Right-handed alpha
Helix 8
8
A
127 143Right-handed alpha
Helix 9
9
A
157 164Right-handed alpha
Helix 10
10
A
165 171Right-handed alpha
Helix 11
11
A
175 192Right-handed alpha
Helix 12
12
A
201 210Right-handed alpha
Helix 13
13
A
216 228Right-handed alpha
Helix 14
14
A
238 243Right-handed alpha
Helix 15
15
A
197 258Right-handed alpha
Helix 16
16
A
259 261Right-handed 310
Helix 17
17
A
263 273Right-handed alpha
Helix 18
18
B
11 23Right-handed alpha
Helix 19
19
B
65 69Right-handed 310
Helix 20
20
B
70 82Right-handed alpha
Helix 21
21
B
87 96Right-handed alpha
Helix 22
22
B
97 99Right-handed 310
Helix 23
23
B
112 123Right-handed alpha
Helix 24
24
B
127 143Right-handed alpha
Helix 25
25
B
157 163Right-handed alpha
Helix 26
26
B
165 171Right-handed alpha
Helix 27
27
B
175 192Right-handed alpha
Helix 28
28
B
201 210Right-handed alpha
Helix 29
29
B
216 228Right-handed alpha
Helix 30
30
B
240 245Right-handed alpha
Helix 31
31
B
249 258Right-handed alpha
Helix 32
32
B
259 261Right-handed 310
Helix 33
33
B
263 273Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1DIZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
44 53anti-parallel
Strand 4
A
35 41anti-parallel
Strand 5
A
28 30anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
44 53anti-parallel
Strand 4
B
35 41anti-parallel
Strand 5
B
28 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
149 153anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il