Analysis of interatomic Contacts of Structural Units in PDB entry:
1DJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DJ0 entry

There are 2 chains in PDB entry 1DJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7ASP 270
B
 PRO 7ASP 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1DJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 48Right-handed alpha
Helix 2
2
A
79 90Right-handed alpha
Helix 3
3
A
144 153Right-handed alpha
Helix 4
4
A
154 156Right-handed 310
Helix 5
5
A
162 165Right-handed 310
Helix 6
6
A
202 216Right-handed alpha
Helix 7
7
A
222 231Right-handed alpha
Helix 8
8
A
232 236Right-handed 310
Helix 9
9
A
253 257Right-handed 310
Helix 10
10
B
34 48Right-handed alpha
Helix 11
11
B
79 84Right-handed alpha
Helix 12
12
B
84 91Right-handed alpha
Helix 13
13
B
144 153Right-handed alpha
Helix 14
14
B
154 156Right-handed 310
Helix 15
15
B
162 165Right-handed 310
Helix 16
16
B
202 216Right-handed alpha
Helix 17
17
B
222 231Right-handed alpha
Helix 18
18
B
232 236Right-handed 310
Helix 19
19
B
253 257Right-handed 310
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There are 2 sheets in PDB entry 1DJ0. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 102first strand
Strand 2
A
10 18anti-parallel
Strand 3
A
64 74anti-parallel
Strand 4
A
53 55anti-parallel
Strand 5
A
64 74anti-parallel
Strand 6
A
245 251parallel
Strand 7
A
115 123anti-parallel
Strand 8
A
137 138parallel
Strand 9
A
115 123parallel
Strand 10
A
189 196anti-parallel
Strand 11
A
175 186anti-parallel
Strand 12
A
157 160anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 102first strand
Strand 2
B
10 18anti-parallel
Strand 3
B
64 74anti-parallel
Strand 4
B
54 55anti-parallel
Strand 5
B
64 74anti-parallel
Strand 6
B
245 251parallel
Strand 7
B
115 124anti-parallel
Strand 8
B
137 139parallel
Strand 9
B
115 124parallel
Strand 10
B
189 196anti-parallel
Strand 11
B
175 186anti-parallel
Strand 12
B
157 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il