Analysis of interatomic Contacts of Structural Units in PDB entry:
1DJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DJ2 entry

There are 2 chains in PDB entry 1DJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15LYS 443
B
 ILE 15LYS 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1DJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 42Right-handed alpha
Helix 2
2
A
43 45Right-handed 310
Helix 3
3
A
75 80Right-handed 310
Helix 4
4
A
94 107Right-handed alpha
Helix 5
5
A
126 140Right-handed alpha
Helix 6
6
A
151 161Right-handed alpha
Helix 7
7
A
167 172Right-handed 310
Helix 8
8
A
175 191Right-handed alpha
Helix 9
9
A
197 216Right-handed alpha
Helix 10
10
A
221 232Right-handed alpha
Helix 11
11
A
245 247Right-handed 310
Helix 12
12
A
263 269Right-handed alpha
Helix 13
13
A
302 313Right-handed alpha
Helix 14
14
A
330 341Right-handed alpha
Helix 15
15
A
349 356Right-handed 310
Helix 16
16
A
379 386Right-handed alpha
Helix 17
17
A
410 425Right-handed alpha
Helix 18
18
B
33 42Right-handed alpha
Helix 19
19
B
43 45Right-handed 310
Helix 20
20
B
75 80Right-handed 310
Helix 21
21
B
94 107Right-handed alpha
Helix 22
22
B
126 138Right-handed alpha
Helix 23
23
B
151 161Right-handed alpha
Helix 24
24
B
167 172Right-handed 310
Helix 25
25
B
175 191Right-handed alpha
Helix 26
26
B
197 216Right-handed alpha
Helix 27
27
B
221 232Right-handed alpha
Helix 28
28
B
245 247Right-handed 310
Helix 29
29
B
263 271Right-handed alpha
Helix 30
30
B
302 312Right-handed alpha
Helix 31
31
B
329 341Right-handed alpha
Helix 32
32
B
349 356Right-handed 310
Helix 33
33
B
379 386Right-handed alpha
Helix 34
34
B
410 425Right-handed alpha
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There are 9 sheets in PDB entry 1DJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
116 119parallel
Strand 3
A
84 87parallel
Strand 4
A
47 50parallel
Strand 5
A
236 243parallel
Strand 6
A
21 26parallel
Strand 7
A
280 285parallel
Strand 8
A
344 348parallel
Strand 9
A
428 432parallel
Strand 10
A
440 442anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
68 71anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
123 124parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
324 329anti-parallel
Strand 3
A
358 366parallel
Strand 4
A
387 394anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
116 119parallel
Strand 3
B
84 87parallel
Strand 4
B
47 50parallel
Strand 5
B
236 243parallel
Strand 6
B
21 26parallel
Strand 7
B
280 285parallel
Strand 8
B
344 348parallel
Strand 9
B
428 432parallel
Strand 10
B
440 442anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
68 71anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
123 124parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 290first strand
Strand 2
B
324 327anti-parallel
Strand 3
B
299 300anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 366first strand
Strand 2
B
387 394anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il